vps9d1 (vps9d1)


Basic Information

Item Value
gene id vps9d1
gene name vps9d1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 13618688 ~ 13647775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250516.3
GTTGTTGCTCGCttccatgtttgttttctggtcGCTGAGTCAATGTTGTTTCATTCAGGCAGGTTTAAATTACTACAGTGGGCAGAATGGCCGCTCCTGCTAATGACAGCAGCCTGAGACCCCTCCAGAACGCCATGCGACTCGTTAAAGTGGCCATTCAGCTGGATACGGGTAACAGACATAAGgATGCATATTGTGAGTATTTGAGAAGTGTCAACTACATCTCACATGCCCTACTTCAGGATGCAGCctttaatgCTGAAGGAGATATGGAAGCAGTGGAAGTGGAGAAGATGGTGAAGCTAGCTGAGCAGTGTTTAGAAAGGATCAAGTCCTGCATAGGAAAAAGAAATGATGCACCAGATCCTGACCCTCCTGCGTCCTCACTCACACAGACCTACTCTAATGTTCCTCTTTTTGTACCAAATCCTGCACAATTAGTGCTGTCAAATGAATCAGCGATGGAGTCAGAGGCCCAAAGTAAGTCAGGCTCCTTCCTCCAACTGTCTAGACATCGCAGAGTCCTCTCAGAAGGTGAAGGGACAGGATGCCCCTTCCTGCCCCCTGAGGTCTTCCAGAAGCTACAAATTGTGGAGTCACAAGACAGCAAAAGGGAGTTAACACCTATTGAGGAGGCTTCACGTCTGAACCAGAAACTGAAGGCAAATTATGAGGCACGTCTGGCAAGGCTGGCACCCAGTCAGGCCATACAAAAAACTTCACTAACCCTCTCTCTGCAGAGACAGATGATGGAGAACCTAATCATTGCCAGAGCCAGACAAGATGCTCTCCAAAGAAAGATGGAAGAGAGGAGACTCCGACTGCAAGAACAAGCAAACAGGAGGTTTTCATCTACTGGAACTATAACCCCTGAGGAACAAGAGCAAAGGGTTCTCTATGCTAATATACTGGAATATGACCAAGATCACGATTGGCCTAAAATTTGGAAAACTAACCTGAAAAAGAACCCAAACGATCCAACGTTGGTTTCAGGCCTTGTCACCTATCTCCTGAGCTGTCCTGATCATCCAGTTATGAAGTTGCTGAAAAAGCTCCAGTATCAAGTGTACAACAGGCTGTATCCCATAGTCAGCCAGTATGCACCCCTCAGCCCAGTGCCTGGTCACTCTATGTCCTTAAAACCCTCCCGCAGTGCCCAGAGCCTGCTTTTCTCAGACAGCCCTAAGGGACGGCAAAAATCTGGCCTGGTCCACAGTGTGTCTGATGCATCCatctcactctcactgcttCACGACCTCAATGCCACTGACACAGAACCCGAGTTGGAATCAGAGGAGCCCCCAACTCCTGCCCCTCCTGATCGAGAAAACTCTTTTGAGGATCTGGAGCAGTTTCTGACTCAGCTGGACTGGACTCCAGGACTCGGTGCTGATGAAACACTCTCAGACGTGACCTGTGACTCAACCTATGGGGACTTGGACTGTCACATTCAGGACCTCGAGGAACGAGCTCTCAAGGAACACCTTAAAGCAATAGTCAAAGATATTCATAATTCTATAGATCGTCTGTTATCTCTGTGCCTGTTGTCCTTTGAATGTCTCAACACTGCAAGTTCTAAAGACCATTGTGTGGCCTGCATAGAGGAGGTCTTTTTTACGCCAATCTGGAGCCCTCTTCTGGCACTATTTAGGAGagtgcacagagagagagagctggctTTTGAGCACAGCGTTCAGCTTTACCATAATGCATCACCTGGTGATGTTGGTGTTGCAGCCAAACTGTACCCTAAAGACTCTGCTCTCCTTCATGGTTCCTACCCCTACGAGTCAGCAGTGCAGGAACTAAAATTGCTATGTAGAGACTACTGTCCACAAAGAAAACTGGAATGCATTGtgagAACATTAAGGCTCATCTGTGCCTGTGCAGAGCACTACCGGCTCCTTCAAGGGAACGATCAGTCACCCAAAACTGCAGCCATTGGAGCTGATGACCTGTTGCCCATCCTCTCCTATGTGGCCCTCCGTAGTGAGCAGCCTCAGCTGGTCTCTGAGTGTGCTGCGCTGGAAGAGTTCATCCATGAGGGGTATCTAATTGGAGAGGAGGGGTACTGCCTAACCTCAATGCAGAGCGCACTGACGTATGTGGAGTCACTTCACTTGGGTGGAGGTTTGCAGCAGGCTGCCAAACTCACCTGAGGGGGtggtaTGGAGATGCATGTTCTTCAGACTACATTCTCCTCTACTGGTCTTTCAGCCCAAGGAACTACCTACTTCAGAGTTCTGTAAAAGCATGCCCATCCATCTTGTGTTGAGCTGGGACTGTGGAGGAGGTTGCACAGAGTGACCCTGGAGCTGACTGGGCCCAAAACCGTCATAGCCTGGTGAGCTCCGGGTCCTGCTGCGTTGGAGAGCTCGGTCCCAAACCACTGCAAAAAAGACTGCTTGGGTTAGTGGAGTGGAATGAAATCGATGTTATGAGGGAATTGGTCAGGGCGGTTGTCGCATTTAATGGAGACATGGAGTGAAATCAAATGGCGTGCCTAATTTTTATTCGGttccccctctttttttttatttctttataatgCCATTGTCCTGAATGTTTTACTGTGAGTGAATGGAGGGCAAAAGCACTGCATACatgccattttaaaataaactaggTTCATTTAGATGTGTTCTCAGGAAGGATAATATATTTGCAGCAGAGTAGTGTGTCAATAAATTATGAGCAAAGAGAGAgtaagttttagttttaaaaaatcattttcagcAATTTTATGTACTTATATACTTTAAAGACTGTAACACCATCTACTATGGGTATTGCGATGGAGAGAACAAAGAACAGACTGGGACTTTATTGTTACATAATTGTTTCTACTACATTTTTTCCCAAAGTCATATTTTGcactttgttttgtgttttcacttTGCCCTACTTCCTTGTACCTGAGCCAGAACTTAATGAGCATTGTTAACGCTTAATTACGAGATATGCCTAGAGTGTGTGGTTTCCAGGACTAACTTCAGGAAACCCCTGTTAAACTTTTTTACAAGATTGAGTAATCTGATCCTAAAGGAGCTCCTTCaattttttctttcattctcacAATTTGATTTGATGACTCATTAAAGCCAATAATGCATTCTTAAGCATAGGTTGAAGAAAGACTTGATGGTTGGAACAagagaagtgtgtgtttgtgcctaggcctgtcatgataactatTTTTGTGTGGATGATCTCTTGttccagaaataattgtgataaacagtATTGTACAGTACAAGACAATTTTATGCCAGTAATATATAATGATtagaaaataatacagtaaGGCAGCTGCACCATTATAGATAGTAATGAACTGTTCATAGTTGAGAATATTCAGAATGTgcaattgggaaaaaaaattaaaccttcTAAGTTTAAATCAACGTACTGactcttattttctgtattggCACGCTTCTTAAAATTACTGTACAAAAGGTTGATAATTGAATTATCCTGACAGGCTTATTGGTGCCAGCCTATGCTTCATCCTAAACTGAAATCTATGAGTTCAACAAGCAGTTTAGAACGTTACCTGtattatgcatttttaaaaaaatatttgaaggtGCTCCAAATGTACGTTTAGGCAATGGTGTAGTAGAACAACATTCATAAAGAGAAtttccataaagaaccatgttCATAATGGAGGTGTGTGCTTGACTTAACGTAAAAGGCTCTTCACACTCAACAATCTTTTTTACAAACATAATTCTTGATGAAAGCAAACCTtctaataatattgtttactatttcaaaaatgtaaaatttagcaAAGCAGCATTGCCAGTCACAAAAAAGAGCGTTAAAAGCTATTCAGGCTCCAGAGAGGTTGAGAATATTAATTGGCCCAAGGGCGACACCATAACACTTTTTCCTGATATgttcaagatgtttttttttttttttttttttttttttaagtgcagattaatgtttaaatatgtttatatggtTTTACTCACAATAACAGTGCAATttgatgtttaaatatgtttatatagttTTACTCTTAATTTATGAAAGGAAATagattaaatagaaaaatatatgggctggagaaaaaaatctcaatgttaaagaaatgttaatattagtgtACCATCGGCAATGCTATCAATAATAAGTGATTGAGAAAAATACTGTAGAactatgtatgtgtatataaatatataaatatgtatctaTTTATGTATCCACTAATGTGACGTTGTATTTCGTCTAGACCACTACAGAGGCTGCTGTCTGGAATGTTGCATGAATGTTTGCTTTATTGCTACTGATGACCTTTTTAATGTGAGGATGAGTGAGAGCGTGTGTTGgattttctaataataaagatattaaataaca

Function

symbol description
vps9d1 Is expressed in brain; forebrain; and neural rod. Orthologous to human VPS9D1 (VPS9 domain containing 1).

NR:

description
VPS9 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250516.3 True 4377 mRNA 0.42 16 13618688 13647775

Neighbor

gene id symbol gene type direction distance location
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 818313 12783799 ~ 12800375 (+)
utp4 utp4 coding upstream 1094576 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 1284773 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 2157043 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 2325015 11269015 ~ 11293673 (+)
spata2l NA coding downstream 12155 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 18910 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 313280 13961055 ~ 13972324 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 360240 14008015 ~ 14022424 (+)
LOC103043515 LOC108419231,LOC105022153 coding downstream 412028 14059803 ~ 14075538 (+)
G157943 NA non-coding upstream 273224 13275460 ~ 13345464 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 636217 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 756032 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 860599 12741848 ~ 12758089 (+)
G157905 NA non-coding upstream 957580 12655809 ~ 12661108 (+)
G158023 NA non-coding downstream 200867 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 336171 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 440691 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 468544 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 501711 14149486 ~ 14150489 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 877686 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1251918 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2475217 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 2863990 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2904706 10700788 ~ 10713982 (+)
LOC107197649 LOC108416831 other downstream 86170 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 326046 13973821 ~ 13980025 (+)
G158369 NA other downstream 1402447 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1480593 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1658437 15306212 ~ 15315552 (+)

Expression


Co-expression Network