hsbp1 (hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299)


Basic Information

Item Value
gene id hsbp1
gene name hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12735519 ~ 12741002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214078
TAGGTTCAGCTGATTATTTGGGGCAGAtattaagctagctaacctagttgcCAGCATATCAGCTGAATTTAATGTGGACAGTTTGTCAGATTATTAATTAGACTTTTTTTCACGCGCGGTAAGGATGGCAGAAACAGATCCCAAATCGGTGCAGGATCTTACAGGGGTGGTGCAGACATTGCTGCAGCAGATGCAGGACAAATTTCAGACCATGTCAGATCAGATCATCGGGAGAATTGATGAGATGAGCACGCGCATTGATGACCTGGAGAAGAACATCGCTGACCTGATGACTCAGGCTGGGGTGGAGGAGGTAGAGGGAGAGAACAAGCCCAAGGAAGGCGAGGCCTCTTAGTGAAGgctgCCAAGTAAAAGTGAAGTAAGGACATTCAAGAGCAGCGATGATTCTCCTGCCCTCTAGTGGTGACTGATCTGATTTGATGTGTTGTATAGTTCTTTTTATACTGAGTTCTAATAATGGTAATATTTCCTGATAGAGCTGCTATCCTTTAGGTTGTTTTCTTTAACACATATTTCAAGTCACTTTTTAAACCCATTTTAAGGCCAGCTATCCACCCAGTCGAGGCCTTAGTTACTCTATTATGAGCACTTCTTGTGTGCTAATCAGACTTCATTCCAGTTTCCACTGAATTTCTGCTATTAAAATGGTTTCATACAAAA
>TU214079
TAGGTTCAGCTGATTATTTGGGGCAGAtattaagctagctaacctagttgcCAGCATATCAGCTGAATTTAATGTGGACAGTTTGTCAGATTATTAATTAGACTTTTTTTCACGCGCGGTAAGGATGGCAGAAACAGATCCCAAATCGGTGCAGGATCTTACAGGGGTGGTGCAGACATTGCTGCAGCAGATGCAGGACAAATTTCAGACCATGTCAGATCAGATCATCGGGAGAAATATCCTTTTGTGTGATTCCTGCAGTATTTCAC
>XM_007250514.3
TGCTCCCTTCAAACTAGGAGATAAGCTGAGGAGGGAGGAGCCgcatttgggacacagccacaGAAACTGCTGCTACCACGGGATTTCCTTTCGTCCTCTCGCGAGATTACCGCTAGGTTCAGCTGATTATTTGGGGCAGAtattaagctagctaacctagttgcCAGCATATCAGCTGAATTTAATGTGGACAGTTTGTCAGATTATTAATTAGACTTTTTTTCACGCGCGGTAAGGATGGCAGAAACAGATCCCAAATCGGTGCAGGATCTTACAGGGGTGGTGCAGACATTGCTGCAGCAGATGCAGGACAAATTTCAGACCATGTCAGATCAGATCATCGGGAGAATTGATGAGATGAGCACGCGCATTGATGACCTGGAGAAGAACATCGCTGACCTGATGACTCAGGCTGGGGTGGAGGAGGTAGAGGGAGAGAACAAGCCCAAGGAAGGCGAGGCCTCTTAGTGAAGgctgCCAAGTAAAAGTGAAGTAAGGACATTCAAGAGCAGCGATGATTCTCCTGCCCTCTAGTGGTGACTGATCTGATTTGATGTGTTGTATAGTTCTTTTTATACTGAGTTCTAATAATGGTAATATTTCCTGATAGAGCTGCTATCCTTTAGGTTGTTTTCTTTAACACATATTTCAAGTCACTTTTTAAACCCATTTTAAGGCCAGCTATCCACCCAGTCGAGGCCTTAGTTACTCTATTATGAGCACTTCTTGTGTGCTAATCAGACTTCATTCCAGTTTCCACTGAATTTCTGCTATTAAAATGGTTTCATACAAAACAA

Function

symbol description
hsbp1b Predicted to enable serine-type endopeptidase activity. Acts upstream of or within central nervous system development and neural crest formation. Is expressed in head. Orthologous to human HSBP1 (heat shock factor binding protein 1).
hsbp1 Enables identical protein binding activity. Involved in axonal transport of mitochondrion. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
heat shock factor-binding protein 1

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K19765 HSBP1; heat shock factor-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU214078 False 681 TUCP 0.43 4 12735632 12740999
TU214079 False 269 lncRNA 0.43 2 12735632 12736988
XM_007250514.3 True 797 mRNA 0.44 4 12735519 12741002

Neighbor

gene id symbol gene type direction distance location
utp4 utp4 coding upstream 211407 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 401604 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1273874 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1441846 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 1469199 11231961 ~ 11266320 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 42797 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 877686 13618688 ~ 13647775 (+)
spata2l NA coding downstream 918928 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 925683 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 1220053 13961055 ~ 13972324 (+)
G157905 NA non-coding upstream 74411 12655809 ~ 12661108 (+)
G157903 NA non-coding upstream 85335 12647988 ~ 12650184 (+)
G157795 NA non-coding upstream 302223 12325867 ~ 12433296 (+)
LOC111194767 NA non-coding upstream 303799 12429768 ~ 12431720 (+)
G157809 NA non-coding upstream 350830 12379493 ~ 12384689 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding downstream 846 12741848 ~ 12758089 (+)
G157926 NA non-coding downstream 121387 12862389 ~ 12862656 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding downstream 233486 12974488 ~ 12982471 (+)
G157943 NA non-coding downstream 534458 13275460 ~ 13345464 (+)
G158023 NA non-coding downstream 1107640 13848642 ~ 13849299 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 368749 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1592048 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 1980821 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2021537 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 2143996 10572743 ~ 10591523 (+)
LOC107197649 LOC108416831 other downstream 992943 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1232819 13973821 ~ 13980025 (+)
G158369 NA other downstream 2309220 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2387366 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 2565210 15306212 ~ 15315552 (+)

Expression


Co-expression Network