G157809


Basic Information

Item Value
gene id G157809
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12379493 ~ 12384689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU213929
AATATCATCAGCTCTGACTCATAGCGCACCAAGGCATTCTTCTCCTGGACGAGTTTAAACCACTCTTGCATCAGCTTCGGATCATCCTTTTTACCCATACCTGAAAACGGCAAAGCATAAAAGAGTGAGGAACCTCCCGGACATCTAGTCACCCACACAGAGATTCGACACGGACACCCACACAGCCAATGCAATGACAGCCAAGCTGGGATGTCTTTTGTCAGGGGATGTAGGGTCAAGTGTGCTACCAAATAATTCTCAGAAGATGGCGTGGAGGTACGTGTTCTGATTTTCAAATCACTTTAAGGGCACTCTGGGACACGGCGTTTTTCTCAGGGCAAAGGAAAGGGCTTAAACTCTTATGATTTCCATACATAGATACCAGAGATATTCTCTGCAAGCATAAGATGCActcacagaaaaaaaggatttaatAGAAGTTTACTGCATGAaagcaatttttatttatttatttttctctgtccATTATATTCTGCATACAGTGCACATTGCTTCCTAAAGTGTACCAAACTTTACCAAAATAACCTGCTCCAAAATGCTACTCATTATTAGGCATTTGATCTATAGTCATATCAAAAAACGGCACACCCCATAAAGACCTTttcctttttaaacatatttaaacaatacagagagatagatgtaatataattaaacacttaaaactgaAGAATGTTCtttgtgtaaaaagaaaaaatcacattcATAAAAAGTTATCAATagaaatgcagttttaaaaaattcCCCCATATTTATTACTACTTGGATTGCCTAAAATTTGTATCAGTTGTAGCACACCAGCTGTAGAGGATGAAAGTATGGTTAAAATGGTTGTTGGAGGAGTCTGTTGTATTTAAACCTCAGACATTAGTTTAGTTTGCTCTTGATTGTTATGATTTAGAGTCAAAGGGAAAAATACACAAGGGCAAGACTAGTTTTACACTAAATactctgcaaaaaaatgtacatgtaaatgtaaataaggtCAGAAGAACACACAAAGTGTAGGGGTGCTGAGTTAGTACAAGAGATAATATGAGTcccttttaaaactgttttcctTCTATAGCTCTGTTCCAACCAGTTTAGCCATTAACAATGCTTTAATTACATATAACTTGTTCAGTCAcaatttctagaacaaaatgataaaatacaaattataaaAACGCTGCTGTGTCATTTCtgttacatcaggattttaatcataaattatttatagccatgtGCTCTCaatcacaataagaaaaatcaAGAATGAGCtgcttaaataatttaactgaTTTATCTTTGAATTTTGTACCAATTATTAGAACTGGGTCTGAGCTCTTATGGGTTAACTGTGGCAAGAGATACACGGTGGCTTTTCCTGCCCATACTGCCAGTTAACATATACCTTCCTAGACTCATACATCTACAACCTTCTTTCTAAAAGCTTCAGAGAGCTCTATGAGTCTGGTCATGGTGATTCCACTCAATTCAACAATCAACCAAACTAATATCTGAGGTGTAAATAATACAGGCTCATTCAACACCCTTTCATAGCCTGTTCTAATAATCCGCAGCTAAGCAGCTGCACCTGATTCTAATTTTAGGCATTTTAAGTAGCAATAACTGTGGGAGTGTCCtaactttttcttttacaaaacatttttatgattttaaatgaCATGTCTTCGGTTTTAACGTGTTCACTTTCATTACTTCCATCTGTCAATActaattttgtatttgtttaaatatgtttaaaaaatatatttatttttatttttttaacataactGTACATTCTTGATCCCATGTTGtaccagtgtgtctttgctttcatATTGTAGCATGCAGTACTGAAGTCCATGGCCAATGCAGACACAGTCACTGGCTGCCCAACTGGGCAACTGTACATATGTCAGTTCATGCTAGTACAGTCCTCAAAGCTTGTGACATGTAGCCCCTGTTCCATCcctttcagacacacacacacacacacacacacacaccctttttCACACTCACATGCAAACAGATCAGTGGAGCGAAGCGGTATCAATGAGCCAACATGGGGGGCAAACCTGGATGCAACACGACGTACTTAGCTGACAGAGCGGAGGCTCGCGCAacacaaaaaggaaaaacacagtaCACACATAAACCGAATGTCTGTGCTCGCTGGCGCCGCCGTTGGctgttttataaacacacagagaggcAAATTAAAGGTCCTCTGAACTatgtgagagacagacagatagagagtgagTAGGACAGTtaggaacagagagagaaagcgagacaGAGGACAGACACACAATGATTGACAGGATTTTGGAGGCTCAACTTATCCAACGGACACGCACTGCCAGCGGCCCCCACCACACTCAGCCCCATGCTCCCCCAacgaagaaacacagagagaaaaccCAGAGAGAAAACCACAGTTAGCACAGTCTCAGAGCAGCCAGACCAACACACAGCCACTGGGGCTGTATTAATCCACgcaaaacacatacacaaacatacatacatacacgcGAACACACATACTGTAATTTACTGCAGGTACTCATTTTTGGGTTCTGGTTGTGGACAGAAAGCTTCTGACAGCTTTCAAATGTCTTTATGTAGTCTATACTATAGCCTAGAGATGCCGCTAATTTCCAAACTAAAATGTGATTATTACTACAAGAATTCTCATTGTGAGTGtcaattaaacattttgcaGTATTCctgtaataaaaacacataacCCCACCTCCCCAGGTAAAACTAACACTTTCCGAAAAGGGACACCTGTTCATGcactgttgctttaaaaaacaatagCATTGAAAAAGCTTTAGAAGAGATCACACTGACCTCACTGAACTTTTCTACTATATtctggagcattgctgtaagaatttaattgcattcattgACATTGGAATGTTCACCTTATTGTAAGTAAATTGAacacaaaataagcacaaaaagtcaccagtcaagttattctgattcgtgggtccattttttttactatcagacttaatttttgcttgatttaagtcttactttagtcattttaagacttagtaatagcttattttaatacatctaatcaAGATCAAAAACGTGCTTATCCTTTCGGCAGATtctgcttaatataagcatatacatctcaatttgcaatattttgtctagtttttgccaatagaTTTCTTGCAATTTGAGGAAAGGAAagactaaaatgtgcaggacaaCTGAATTACTGTCTCTTTAGGTTTGTATAAAGCCTGTGATATTGGTATATTACAGTTTAGACAAGGGGTTAACAACCTCAGTCCAAAATTTAGCATGCCCATTTAACTGATCATGACCTTATAAAGGCAGTAATTAGACTTATCACACATTGATTAGAGGTCTGCTAAAAGGCAGCTCTCTAGGAGCAGTACTACTGACCCCTGAATTAGACTAAGCTTAAAGATGAGTTTTTCCCAAAGGATCTGCAAAATAACCTGGGTTAAGGCTGCACCATACCAAAGGTAAGAAAGAAGGTAACTTGCTGATAAATTCTGCTTTATAAAACAACTCTCTTCGTCTaaaacaatctctctctttctacatttatacatgtacaaACTCATCCACACATTATGGGccaaacacacatcaacacacaatTAAAAAGATTACAATAGACAGTTACTACATACAGCCGTACGGATCAGACTTGAGGGAGAAAAACACACCATATGGACTAGTTTTCATATAAGAGGTTTAGTTCTGTAGCAAACAGCAAACCAATGTTAAGCAGAGCATTCTGCTAGTAAAACTGGAGCTTTCCGTGCAAGTTATCAGGTTCAGGTGGCAAAACTGAGCAGTTTTGCTAAGGGTTCTTCAAAGAActaatgtaaaattaataaaaaaggggGGTAAGGTAAAGAGGTAGTCAATGCTCCACCAATCAGGAGCAGGTAGTAAGGCCGCAGGCCAGGATTGTTGTAGTAAGTGGGCTGGCTGGCCGGCGGCAGATGAGACGGGGTTTACGTTACCTTCTGGGGTACAGCATGGGCAGAAGGACAGGGGTCTCCAGCGAGGGGTCCCGACATAGGGCTCAACTTCCACAATACAGGgtatgaggagagagagagagggagaaagagagagagagaaagagagagagagagagagaacacagaagTGGTGGAGGTGATGAAAGGAGGGAAAGGGCAAAGGAAATGAAAAACGGGTAAATGCAAAAGAGAAAGGGTGAGAGAGATGATGGAGAGAGAACAGTGAGGAGAAAAATCATAAAAGCAGAAGAACTACAAAAAAACTCAGGAAAAGCAGTGCAGACGTGTGTgtaggagagagagtgagataaaaagattgaagaaagagagtgaaatacTGAAAATACAAAAGAATTTAGCGGTAAATAATGCAGCCCCACTTTGAACTTTCCTCTATTCcaggaaaaaacaaaataattgagTCTGCCTCCAGTGCACAAGCTTATGTCTGCAAATGTCCTCTCTCAAAAAGATCAAAGAACGTTGGCAGTTCTATGTACTAACACGTTCAACATGTTCTGCAAAGTAGTTCTACTCAGACAGATAAGTTGTGGGTCACTAGAGACtcaaaaatgaacacaaaaagGAATGGTGGAGTAATCACCATTCCATCTTTGAGGATGTTTCACATCTATATGAAAGCATCGCCCAGTCTTACAAGACACGAGTCTTTCCTCTGGCTACTTTTGAAGTGGAAAACAGCAACCGACACACCACGCAAGACGAAAGAGAGAACAGGAATGACGCAAAAAAGAAACCCAAATCAAAAGCACAACGCAATGACTGACACATAAGCGCAGTGgtgggtgtggtgtggtggAGGTGGTTTGCAGGAGACAAGCAAGGGAGTCAAAGCCAGAGGAACAGGGCCTTGTGAGCTGACGAGGGAATGGCTTACATAAGCGGGTGGAATGTTGGTACAAGGGACTATCATAGACGTGCATCTCCAGAGAGTCTGCAGTGTAATAAGTCTAGCCTGAGATGCTGTAGATAGCCATTAGGTCTATATACCATTACCCAACATTGCATCTAATCAGCAATGTCAAAACTTTAAACATTatgtaaaaagtttggacataccatgatctctttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213929 True 5164 lncRNA 0.39 2 12379493 12384689

Neighbor

gene id symbol gene type direction distance location
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 45578 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 917848 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1085820 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 1113173 11231961 ~ 11266320 (+)
LOC103046273 NA coding upstream 1172748 11146162 ~ 11206745 (+)
utp4 utp4 coding downstream 130773 12515462 ~ 12524112 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 399110 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 1233999 13618688 ~ 13647775 (+)
spata2l NA coding downstream 1275241 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 1281996 13666685 ~ 13675380 (+)
G157807 NA non-coding upstream 1523 12375422 ~ 12377970 (+)
G157798 NA non-coding upstream 61278 12313716 ~ 12318215 (+)
G157781 NA non-coding upstream 781964 11594033 ~ 11597529 (+)
G157782 NA non-coding upstream 786502 11591964 ~ 11592991 (+)
G157773 dnah3 non-coding upstream 863384 11515860 ~ 11516109 (+)
LOC111194767 NA non-coding downstream 45079 12429768 ~ 12431720 (+)
G157903 NA non-coding downstream 263299 12647988 ~ 12650184 (+)
G157905 NA non-coding downstream 271120 12655809 ~ 12661108 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding downstream 357159 12741848 ~ 12758089 (+)
G157926 NA non-coding downstream 477700 12862389 ~ 12862656 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 12723 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1236022 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 1624795 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 1665511 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 1787970 10572743 ~ 10591523 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 350830 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 1349256 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1589132 13973821 ~ 13980025 (+)
G158369 NA other downstream 2665533 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2743679 15128368 ~ 15137270 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012636 mical3a coding NC_007129.7 CM002902.2 10784730 ~ 10921940 (+)