CI01000012_10276814_10291389 (CNNM2, CNNM4, CNNM2B, CNNM2A)


Basic Information

Item Value
gene id CI01000012_10276814_10291389
gene name CNNM2, CNNM4, CNNM2B, CNNM2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10276259 ~ 10292203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10276814_10291389.mRNA
TCAATCTTATATTATTATTATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTCATTTTCTGAAACATCAAAGTGTTTGCTTTTTTGTTGAATTGAGTGGTTCTGTGCGGGAATCAAAAACAGACTTTTCCTGACGTCTTGTGGAATGTGACGTAACACATGAAGAAGGCGTTACGAGTTTGTTTATCTGGCAGAGACGCACACGCGCTTACAAGCAAATAGAAAGCAAATCTTTTTATTTTGCTCCGTTATTTTATTGTACATTTCCTCACGCAGGCTATGATTTACCCTACTAAAGCAGTCATATTGATTTTTTTTTTTTTTTTCCTTTCTCTTTTTTCAGAATTAACCTCGAAATTTCAATGGGTTAATGCGATGCATTGGCCAGTAGTTTCAATGGTAAGATACCGTTGGCCGCCGGCGACCACTCCCACCTTTTAGGTACTGCTCATTTTACCCGCTGATTGGCCTTTGGAAACACCCACTACCGGGTTTAAGGCCGATAGCACCGCCTCTCCGCCGATATCTCGCGCGATATCATTGGATGCGGCCGGGCTCAATTTGCATACGCTACCGGACTGGTCAAAACCAACGTCCGTCATTAGGTATCTGTACTCACAGCAGTTCACATAGAGCGTGCTGGTGTGTCATCGTGGTGCAGAGAGGCAGCGATACGCGGTGAGTAATGCCGGCCTTGTTGCTTGATGTCAGGACGGCTATAGAGAGGATGAAGGCGGACGCGGATTCCCTCTGACCGTGGCATCCTACATTCATTGACTGAAGTCTGCCCATTGTCAACATGGCAGAGCAATGGACCGCAGTGCCCACTTCTAATATGGCGGCGCTGAACCGGGCTAGATCATTGACTGTTATATTCTTAATTGTCAGCAGTTGTCTGATCAGTAGCGTTGATGGCAAAGACGCGCCAGAAGAGACTGTCATCATTGGCCTCCGGCTCGAGGACACCAACGAGGTGTCATTTATGGACGGAGGCATTTTGCGCGTCAGCGAGCGATCTCGTGTCAGGTTAAGGGTCTATGGGCAAAACATAAACAACGAGACGTGGTCCAAACTCGCCTTCACGGAACACCGCAGCAGCAGCGCACCTGCGGAGAGCCAGAGCCCCGGAGACGCACCTGCCTCGCATCCCTGCGGCATCCGATCCTCCGATATCATCATCCTTCCTAACGTTGAGGTAAACAGAAAGACATCTGGTATTATTGAATTAGAGGTGAAGCCTCTGCGAAAAACAGAGAAGAGTAAATTGTATTACCTGTGCATCGCCACCACAACACCTGGCGCGCAGGACTCGTGGTCCGAGAACACCTGGATCTATCACGACGGGCATGACACGAAAGTGCTCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCTTTCTGGCTGCAGGTTATTTTTATTGCCATGTTGTTGTGTTTGTCCGGCATGTTCAGCGGGCTGAATCTGGGACTGATGGCGCTGGATCCCATGGAGCTCCGGATTGTCCAAAACTGCGGGACTGAGAAGGAGAAGAATTACGCGAAGAAAATCGAGCCAGTCCGAAGCCAAGGAAACTACCTTCTGTGCTCTTTGCTCTTAGGAAATGTTCTGGTCAATACCACTTTGACCATTCTGCTCGATGACATCGCAGGATCGGGGCTGATCGCTGTGGTGGTGTCCACTATAGGCATCGTTATATTCGGAGAAATAGTGCCACAAGCCATCTGCTCCAGGCATGGGCTCGCCGTGGGCGCAAACACAATATTCCTGACTAAATTCTTCATGATCCTCACTTTCCCTGCATCCTATCCCGTCAGTAAACTCCTGGACCACGTGCTGGGGCAGGAGATAGGCACTGTGTACAACAGGGAGAAGCTGCTGGAGATGCTCAGGGTGACCGATCCGTATAATGACCTGGTGAAAGAGGAGCTCAACATCATCCAGGGTGCTTTGGAGCTCAGGACTAAAACTGTGGAGGATGTCATGACGCCTTTGCGAGACTGCTTCATGATTGCGGGTGATGCCATCCTGGACTTCAACACCATGTCTGAGATCATGGAGAGCGGCTACACGCGCATACCTGTATATGAGGGCGAGAGGTGTCATATTGTGGACCTGCTGTTTGTCAAGGACCTGGCCTTTGTGGATCCAGATGACTGCACGCCGTTGAAAACCATCACCAAGTTCTACAGCCACCCTCTGCATTTTGTCTTCAATGATACAAAGCTGGATGCCATGCTCGAGGAGTTTAAAAAAGGTAAATCCCATCTGGCCATTGTCCAAAGAGTGAATAATGAAGGAGAGGGTGACCCATTCTATGAAGTTCTGGGCATCGTCACGCTAGAGGACGTCATTGAGGAAATTATCAAATCTGAGATTCTTGATGAGACAGACTTATACACTGACAACAAGACGAAAAAGAAGATAGCTCACAGGGATAAGAAACAGGATTTCTCTGCTTTCAAACCCACAGATAACGAGTTGAGGGTGAAAATATCTCCGCAGCTTCTTTTGGCTACACTGCGTTTCCTGGCAACTGAGGTGGAGTCCTTTAGTGCAGCTCAAATGTCAGAGAAAATCCTCCTGCGCTTGCTGAAACATCCTAACGTCATCCAGGAGCTCAAATATGATGACAAGAACAAGAAAATGTCAGAGCACTACCTCTTTCACCGCAACAAGCCTGTGGACTACTTCATCCTCATCTTGCAGGGGAAGGTGGAGGTTGAGGCTGGAAAGGAGGGGATGAAGTTTGAAGCTGGTGCCTTCTCGTATTATGGAGTGCTGGCTCTAACCTCCTCACCAGAAAATAAGTCACCTCCACGACCGTTCGGACTCAACCACTCAGACTCCCTGAACAGGAGTGACCGGATGGAGGCGGTCACTCCCACACTGGGCAGCAGTAACAACCAGCTCAACTCCTTCCTGCAGGTCTATGTGCCGGACTATTCTGTGAGAGCTGCCTCTGACCTGCTTTACATCAAGGTGACCCGCCAGCAATATCAGAACGCCCTGATGGCGTCTCGCATGGACAAGACGCCTCAGTCCACGGACAGCGAGTTCACCAAGATCGAGTTGACTTTCACCGAGCATCAGGATGGACCACTGGACGAGTCGGCCACTCTTTTGACCACCAACGCACATAAACCCAACCACACTGCCCACAACGACGGGGCTATTTAACCACCCTCAGCGGAGAGAGATGGCGTGAGAGCGCTCGGCTCCATTAGCCTTTCCCGAGAGGCCTTCTCCTACACTGGGCAGCTTTAGTTTGACATAACGAGTCCTCTCATCACGGTCGATTTCAAAGGGGAACATACGCAAAGACTACAATGTGAAGGGCCGCATATCCCACACAATGCATGCACTAATGACCTTAACACCTTTTGTAGGCAGCGGATCAGTCAGGGACCATAAAATCATTTTCGCTCGAGGACAAACACACTTGAAATACGCACTCACACACTTTCACTTAGGAGCAAGGTGACGACCCACACCACACCTCGACCAGACACGATACTAGAAGGACAAAGAAATAACGGTGCCTTTAGACAGCGCTCGGTTACTGTCAACAAAGGAGATCTAGAGGCCCCCGAGGGCCTGGGCGACACAGAGCTCTCCCAAATCTTCCATTCGACCCAGGAAGCCTGAGCAGATGCAGCCACCGATGAGATATCAGCGACCAGGAGGCTTGGAAACACTCGACGGAGATCAATGACGCTAAGCCTTTCGAAAAAA

Function

symbol description
cnnm2a Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within brain development and magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle and plasma membrane. Is expressed in several structures, including brain; digestive system; midbrain hindbrain boundary neural keel; pleuroperitoneal region; and scale. Used to study schizophrenia. Human ortholog(s) of this gene implicated in renal hypomagnesemia 6. Orthologous to human CNNM2 (cyclin and CBS domain divalent metal cation transport mediator 2).
cnnm2b Acts upstream of or within brain development and magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; opercular flap; pleuroperitoneal region; and scale. Used to study schizophrenia. Human ortholog(s) of this gene implicated in renal hypomagnesemia 6. Orthologous to human CNNM2 (cyclin and CBS domain divalent metal cation transport mediator 2).
cnnm2 Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within magnesium ion homeostasis. Located in basolateral plasma membrane and intracellular membrane-bounded organelle. Implicated in renal hypomagnesemia 6.
cnnm4 Predicted to enable magnesium ion transmembrane transporter activity and sodium ion transmembrane transporter activity. Involved in metal ion homeostasis. Part of protein-containing complex. Implicated in Jalili syndrome.

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K16302 CNNM; metal transporter CNNM

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10276814_10291389.mRNA True 3745 mRNA 0.49 7 10276259 10292203

Neighbor

gene id symbol gene type direction distance location
CI01000012_10255038_10257789 INAA coding downstream 18457 10254900 ~ 10257802 (-)
CI01000012_10240747_10243942 RPAC1, POLR1C coding downstream 32317 10240435 ~ 10243942 (-)
CI01000012_10217709_10222035 LDB1A, LDB1, LDB1.L coding downstream 54224 10217208 ~ 10222035 (-)
CI01000012_10201667_10213604 NA coding downstream 62655 10201397 ~ 10213604 (-)
CI01000012_10189922_10194006 NSMCE4A coding downstream 82253 10189876 ~ 10194006 (-)
CI01000012_10303346_10315263 WBP1LA coding upstream 10960 10303163 ~ 10315900 (-)
CI01000012_10322141_10348992 FBXW4 coding upstream 29938 10322141 ~ 10348992 (-)
CI01000012_10358145_10364166 FGF8, FGF8A, FGF8.L coding upstream 65153 10357341 ~ 10364166 (-)
CI01000012_10395715_10408849 SLC2A15A coding upstream 103425 10395628 ~ 10408849 (-)
CI01000012_10626417_10638842 B3GAT2 coding upstream 333686 10625889 ~ 10638963 (-)
G75661 NA non-coding downstream 22897 10253120 ~ 10253362 (-)
G75630 NA non-coding downstream 96429 10179129 ~ 10179830 (-)
G75648 NA non-coding downstream 186041 10090005 ~ 10090218 (-)
G75647 NA non-coding downstream 186986 10089056 ~ 10089273 (-)
G75646 NA non-coding downstream 189747 10086275 ~ 10086512 (-)
G75597 NA non-coding upstream 1643 10293846 ~ 10295724 (-)
G75669 NA non-coding upstream 57903 10350106 ~ 10350365 (-)
G75673 NA non-coding upstream 61733 10353936 ~ 10354138 (-)
G75675 NA non-coding upstream 63041 10355244 ~ 10355471 (-)
G75676 NA non-coding upstream 63298 10355501 ~ 10355770 (-)
G74982 NA other downstream 700287 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 874291 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1192770 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1202802 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 1205592 9067906 ~ 9070765 (-)
G75608 NA other upstream 319712 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 1756841 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1786733 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 2662243 12954446 ~ 12957833 (-)
G77287 NA other upstream 3327073 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006033 cnnm2a coding NC_007124.7 CM002897.2 28618086 ~ 28643260 (+)