LOC103026784 (thsd7a)


Basic Information

Item Value
gene id LOC103026784
gene name thsd7a
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34400663 ~ 34731072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220174
GGCTGTTTGCCAGACCAGGAAGGGAACACAGGAGCACAGgacatccTCCTGCGGGACctccctctcttcttttctgCCGGGGCTCGTTGTGTTCTCGGGAACGGTGTGGATTTGTCATGGGGCTGGGGGAGAGGGGTGCAAGGACAGCATGGAGAGCGAGCGTCCCCGGCGTGTGGAGACTACTGTTACTGTGCTGTGGGATCCACAGCGTTTCCACTCAGACCTCAGGGGACAGCAGGTCACTATACTTCTGGGAGACAGCAGGATTTGTTAGCCGTTAGCGTCAGGGCAGCCCTGGCTCTCTCTATGCCCCTGAATCAATGCGCCGGTGTCTCTGCACTGTTTCACTTTTTCTTGTAAGAGGATGTAGCTGAGTAAGGAGATTAAAAGAGGACGGGATTTATGCTGTGAAAACAAGCCGGTGGAAGAAGAGGACGAAGAGGAAAAAGGGATCTTAGCACAGTGCTAAAAACTTAGCATACTTAGCGTATTTCTGCAATCAGTCCTGACGCTTAGGGGGACAAAAGTGTCCCCCACCTTCAATTTTACCTGTTATCTAATAATACAACAGTAATACATGGTTGGAAGATAATTGTGCATCAAATTGATTATTTGTGCT
>XM_022679411.1
GGCGGCGGTGGTGGAGGCAGCAGTAGCGGTGCTCCAGTACTACACTCATATTGTTGAGCTGGACAGCGCTCTGTCCACTCAGAGCACCAGTGCAGGACCTTGGACAGGACATCATCACAGGACAGTGGGAGCTACTGACACCCTTCagctgttcttcttcttcttcttcaggacatccTCCTGCGGGACctccctctcttcttttctgCCGGGGCTCGTTGTGTTCTCGGGAACGGTGTGGATTTGTCATGGGGCTGGGGGAGAGGGGTGCAAGGACAGCATGGAGAGCGAGCGTCCCCGGCGTGTGGAGACTACTGTTACTGTGCTGTGGGATCCACAGCGTTTCCACTCAGACCTCAGGGGACAGCAGGTCACTATACTTCTGGGAGACAGgtCCGTGGGGGAGGTGTATGGGCAGCGAGTGCGGCCCCGGAGGCAGCCAGAGCCGAGCGGTTTGGTGTGCCCATGTAGAAGGCTGGACCACGCTGCCCACCAACTGCCAGCAGGCATCGCGGCCTGCCAACCAGCAGAGCTGCTTCCGGGTGTGCGACTGGCACAGGGAGCTTTACGACTGGCGGCTGGGCGACTGGAACCGCTGTGAGCCTGTCTTGCCTCGAGGTGGGGGGCTGCGCTCGGGACCTTGTCCGAGGGGCGGGGAGGGCATCCAGAGACGTGAGGTGAGCTGTGTCCTGAAGGCCGAAGGTACGCCTGCCGACAACGCCATCTGTGAATACTTTGAGCCGCAGCCTCGTCTGGAGCAGGCCTGCTTGATCCCGTGCCCGCGGGACTGTGTTGTATCCCGCTTCAGCCCCTGGACGGCCTGCTCCAAGACCTGTGGCCTGGGTCTACAAAACCGCGTACGCTCCATCCTAGCACCTCCGCTGTTCGGCGGTCTACCCTGCCCCAACCTCACAGAGTTTCGCACCTGTGCACCCAGGCCCTGCGAAGGCCGCGAGACGCTCTTCAACCTACGGGTGGGTGGCTGGGGAGACTGTGGACTGCTTCCAGCTCCCCCTGAGCTCTCAGAAGCTTCAGAAGCCTCAGAGCCCCCCGAGGACCCTTCGCTTCCACCAGCCCAGCGAGCCACCCGCCAGGCCCGCCGCAGGAAGAGCAAAGAGCGCAAGCTGGCCAAGGACCCGGAAACACGCGAGCTGATCAAGAGCAAGAGGAACCGCAACAGACTGAATCGACAAGAGAGCAACTTGTGGAATATTGAGGTGGGATACCGGGCGAGGCAGGTGGTCTGCGTCCACCGCAACGGGAGCACCGTGGCGCTCAGCCAGTGCCCCCACTGGAGCCTTCCGGACATGTACCAGTCCTGCCTGATGCCCAAAGACTGTGTGGTGAGTGAGTGGGGGCAGTGGGGTCCCTGCTCGAAGACCTGTGCGGACCCCAGCATCACCAAGGGCACCCGCACTCGCAGCAGACAGGTCCAGCAGCTTCCTGTGGGCGGAGGAGCAGAGTGCCCCCTGCTGGAGGACAGCCAGGAGTGTGAACCTGTAGGAGACGGCATCCCACCCTGCGCCACCTACAcctggaggaccacggagtggGGCGAGTGCCGCGTGGACGCGTTGCTAAGCCAACAGGACCGGCGCCGTGGCAACCAGACGGGCCTGTGCGGGGGCGGCCTGCAGACGAGGGAGGTGTACTGCGTTCAGTCCAACGCTGAGCTGCTGTCGTACCTGAGCGTCAACCAGGCCAAGACAGAAGGCCAGCCTGTGACCAGTCCGAAGCCTAGTGCCCCGCCCCTCCTGTCCATCACATACGAGATCACAGCTTCCCAGCCGGTGGACAGTCAGCTGTGTGTGGGGCCGGTGCCAAGTACCAACCAGCTGTGCCACATCTCGTGCCCTATGGAGTGTGAGGTCTCTCCCTGGTGGGCCTGGGGGCCGTGCACCTTTGAAAACTGCAACGACCAATCAGTGAAGAAAGGATTCAAGTTTCGAAGGCGAAAGATCACAAACTACCCAACGGGTGGAGAGGGAGACTGCCCCCACCTGGTGGAGGCCATACCCTGCGAGGAGCCCAGCTGTTTCGACTGGCAGCTGGTGAAGTTAGACGAGTGCGTCCCCGACGAGGAGATGGACTGTGGTCCAGGAACTCAGGCCCCTCAGGCTCGCTGCGTCAACAGTGATGGTAAGGAGGTTGATAAGGAGCTGTGTGACGAGGCGTTGTTCCCGGCCGCTGTGCCCTGCGTGGTTCCCTGCCCCAAAGACTGTGTCCTCAGCCCCTGGACCCCCTGGTCCACCTGCTCCCAGACCTGCTCCAGCAAAACAGCCGAGGGCAAGCAGATGAGGACCAGAGCCATCCTGGCCTACAACGCTGGAGAGGGAGGAGCCAACTGTCCAAACACGAGCGCCCTGCAGGAAACCAGGAACTGTAACGAACACGCCTGCATCGTCTACCACTGGCAGACCGGCCCCTGGGGGCCCTGTACCGAGGACACATCCATCACCACACTCAACTCCACAGCCGCCAGCTCCAAACCTGCTCCCTCCGGATCAGAGAAGCCTTCCTGCGCTACGGGCATGCAAACCCGCAAGGTCATCTGCGTCAAAGTCAACGTGGGACAAGTCCCTCCAAAAAAatgTCCAGATGGTCCTCGGCCGGCGTCAGTGAGGTCGTGTGTGTTGCCCTGTAAGAAGGACTGCATAGTAACGGCATTCAGTGAATGGACTTCCTGCCCAACATCCTGCGAACCAGGTACCGTTGGCCAGAAGAACAAGCAGAGCCGATTCCGTGTGATCATCCAGAAACCCGCCAACGGTGGTCTGGACTGCCCCGAGACTCTGTATGAAGAGAAAGACTGTGCAAGTCCCCCTCCAAACCCAGCCTGCCCTGTGTTCAGGTGGAAGACTCACAAGTGGCGCCGCTGTCAGTTGGTTCCATGGAGCATCCGGCAGAACAGCCGAGGAGCTCAGGAGGGGTGTGGGGCGGGGCTCCAGACCAGAGCGGTCTCATGTCGGCAGCTGGACGGGTCAATAGCAGACATAGGCCGGTGTCTGAAGTTTGCCAGCTCCATGCCAGCCATAAACCAACCGTGCCAGCTGCCGTGCCGAGACGACTGCCAGCTCACCAGCTGGTCCAAATTCTCCCCCTGCACGGCGGACTGCGTGGGGGTCCGCACTCGGAAAAGGGCTCTAGTGGGGAAGAGTAAGAAGAGGGATAAGTGTAAGAACAGTCAGATGTATCCGCTGAGCGAGACGCAGTACTGCCCCTGCAACAAGTACAACGCCCAGCCCGTGGGTAACTGGTCGGACTGCATCCTGCCTGAGGGCAGACTGGAGAGCGCTCTGGGCATGCGGGTGCAGGGGGACGGCCGGGAGTGCGGTCAGGGCTACCGCTACCAGGCCATGGTGTGCTACGACCAGGACAACAGGCTGGTGGAGACCTCGCGCTGCAACAGCCACGGGTACATTGAGGAGGCCTGCATCATCCCGTGTCCCTCAGACTGTAAGCTCAGCGAGTGGTCCAACTGGTCGCGCTGCAGCAAGTCCTGCGGCAGCGGGGTGAAGGTGCGCTCCAAGTGGCTCAGGGAGAAACCGTACAACGGAGGGAGACCCTGCCCCAAGCTGGACCACATCAATCAGGCTCAGGTGTACGAGGTGGTCCCCTGCGTGAGCGACTGCACTCAGTATGTTTGGGTGACCGAGCCGTGGAGTATGTGGAAGGTCAGCAACGTGGACCTGAAGGAGAACTGTGGTGAAGGAGTGCAGACCAGGAAAGTCAGGTGTATGCTGAACACTGTGGACGGCCCCACCGATGCTGTAGATGACTACCTGTGTGACCCAGAGGAGATGCCCGCAGGGACCCGGGAGAGCCGGCTGCCCTGCCCGGAGGACTGCGTGCTGTCTGACTGGAGCCCCTGGACTCCCTGTGTGCTGCCCTGCAGTGGTCGAGGCGATAGGCAGAGGACGGCCTATGCCCTGCGGCTGCCCAAAGAGGGCAGAGAGTGTCCTAAAAGCATGGAGACCGAGCCCTGCCTGCTCAACAGGAACTGCTACCATTACAGCTACAACATCACAGATTGGAGCACGTGCCAGTTGAGTGCCAGCGCTGTGTGTGGAGTCGGGCTGAAGACCCGCATGCTGGACTGCGTCAGGAGCGATGGGAAATCTGTGGACCTCAAGTTCTGTGAGGAGctgggactggacaggaagTGGCAGATGAACGCGTCCTGCACGGTGGAGTGTCCTGTGAACTGTCAGCTGACGGAGTGGTCAGTGTGGACGGAGTGCTCTCAGACCTGTGGACTGGAAGGGAGGATGTCTCGGAGCCGGTCGTGGTGGTTTTTCTTCTCCCTACCtatatATATCTTAGCTCACTGTCTCTGTgatGTGGTGTGTGGTGAAGGACGGCGCTTCAGGAATCTGTCCTGCTTTGTGTCGGATGGGTCCAGAGACGTCCCCGGcagtctggtggaggaggatCTGTGTGCTGCTCTGGAACCGGCTGTAGATGGAGATAAAAACATTGTGTTGGAGGAGGGCTGTACTTTACCCTGCCCAGGTGACTGTTATCTGATGGAGTGGTCTGACTGGAGCTCgtgtcagagtgtgtgtatgaaggGTCAGAGGCTGGATTTCAGTGCGGTTCAGGTCCGTTCCCGCGCTGTCGTCGCTCAGGAACCAGAAAACATCGCCCAGTGTCCCGATCAGGAGTGGCAGTCCCGGCCCTGCACAGACGGCGAGTGTTTCGAGTATAAGTGGGTGAACACTCCTCGTCTGGTGTGGTGTGAGCGCTCAGACGGAATAAATGTCACAGGAGGCTGCCCACCCACAAGCCTGCCTGGAACAGAGGGGACCTGTGACCCACCGTGTGATCAGCCTCGCTCCTTCTGCTCTGAGgaagctctgtgtgtgtgtgaggagggcTACACTGAGGTGGTGACTCCGGAGGGTCTGCTGGAGCAGTGTGCTGAGATTCCTGTGCTGGAGATTCCCACTGCAGGAGACAGGAACTCCGACGTGAAGACCAGCCGTGCCGTGGACCCCACCGCCCCCACCACAGGGCAGCCGGGACGCCCCGGACGCACCTGGTACCTGCAGCCCTTCGGACCTGatggTAAACTGAAGACCTGGGTGTACGGCGTGGCCGCCGGAGCCTTCGTCCTGCTGGTCTTTATAGTCTCCATGATCTACCTAGCATGCAAAAAGCCAAAGAAACCCCAGCGAAGACAAACCAACAACAACAGGCTGAAGCCCCTCACTCTGGCCTACGACGGCGATGCTGACATGTAGCCCTGCTCGGGAAgaccaccaacacacacaatcaaacacacacacacacacacactctctcacgctGAGCAATGCCTAACTCTTACAGATCTCTTCTGGATTCTGGAGCCCttctccatcatcatcatctgccTGAATAGCTGAATAACTTTACTAGCTGAAGGtccttgttgttgttttttatctaTATCTCTTCTTTTGTTACAGCAGAGCCTTCACCACTCCCGCTCACAACGGGAGGACgcctttttttttacgttattCTTACGTTATCTGCTTGTCTGAGAAGGTCCATCCTCTCAGAACTGATCAGCCTGGTGACGAATGTTACCCAACATTTTCTCAGCTGacgatttttattattatcaaggCCAAGGGAGGACGAAGGAATCGAGTAAAggccaaaatattaaaaacatatataaaaaaacaagaatacagGACTACACAGTATTTCCAAACATTCTAACGGACTTGTCTTTCTTCTTGCGAGCTCCCGGGCAGCAGCCTTTCTATGGAAGGTGAAAGCGTAGAGGAACCCAATCGCTCTCCTGGAAGTACtgcctctctcctcctctcctcgtTCCAGGCACTATTGCACTATATTAGTGCAGCATGATATGCACTTCAGTCAGGGTTTGCCGCTGAACTTCGGCAGGAACGTGCTCAGCCGGGCTGTcgagaaagaaaataagaagaaaaaaatggaaataaaaagagaagatgagagaaaaacagaaaaaaagagtaaaaatgtgGTTGGGACGTCGGTCGTACTTCAAAGCCGAAGTTTTTCTCATTTGCTtgatctgttttattttctctctctgttgggATTTTCACGTGTGCGTTGTATAGGTCGTCTGACGTGTCTTTCTTTCTGCTCATCTCTCTCT

Function

symbol description
thsd7a Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane.

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 7A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220174 False 619 lncRNA 0.50 3 34708790 34731072
XM_022679411.1 True 6139 mRNA 0.58 30 34400663 34716139

Neighbor

gene id symbol gene type direction distance location
LOC103027073 NA coding downstream 7215 34380613 ~ 34393448 (-)
ica1 ica1,LOC107592479 coding downstream 31794 34355339 ~ 34368869 (-)
LOC103027365 LOC108433847 coding downstream 128664 34227759 ~ 34271999 (-)
LOC111194736 NA coding downstream 226844 34164136 ~ 34173819 (-)
LOC107196877 NA coding downstream 351076 34041788 ~ 34049587 (-)
LOC103025397 LOC108431712,LOC107668485,LOC107712581,LOC107734866,LOC107659171,LOC103379346,LOC105892636 coding upstream 886527 35617599 ~ 35777360 (-)
kiaa0355 kiaa0355,LOC102798860 coding upstream 1080922 35811994 ~ 35886615 (-)
wtip wtip,LOC107600421,LOC107594378 coding upstream 1194491 35925563 ~ 35970507 (-)
sdr42e1 sdr42e1 coding upstream 1245108 35976180 ~ 35982068 (-)
pigb pigb coding upstream 1439572 36170644 ~ 36182267 (-)
G162493 NA non-coding downstream 26862 34373402 ~ 34373801 (-)
G162470 NA non-coding downstream 47086 34351366 ~ 34353577 (-)
G162461 NA non-coding downstream 179330 34220925 ~ 34221333 (-)
G162460 NA non-coding downstream 180141 34220112 ~ 34220522 (-)
G162453 NA non-coding downstream 206102 34194315 ~ 34194561 (-)
G162655 NA non-coding upstream 120990 34852062 ~ 34909112 (-)
G162684 NA non-coding upstream 608305 35339377 ~ 35340676 (-)
G162770 NA non-coding upstream 1068074 35799146 ~ 35803252 (-)
G162774 NA non-coding upstream 1073507 35804579 ~ 35805023 (-)
G162779 NA non-coding upstream 1100772 35831844 ~ 35903849 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other downstream 285261 34097928 ~ 34115402 (-)
tap1 NA other downstream 1725394 32651968 ~ 32675269 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 3618955 30699170 ~ 30781708 (-)
G161711 NA other downstream 4074805 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 5459276 28886911 ~ 28941387 (-)
c18h15orf65 NA other upstream 1407831 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 1608308 36339380 ~ 36354701 (-)
G163230 NA other upstream 3147743 37878815 ~ 37879415 (-)
LOC111194721 NA other upstream 3250024 37981096 ~ 38024333 (-)
G163591 NA other upstream 4696776 39427848 ~ 39428541 (-)

Expression


Co-expression Network