G161711


Basic Information

Item Value
gene id G161711
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30315606 ~ 30325858 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219094
acacacacacacacacacacttacacacacacacacacacttacacacacacacacacacacacacatatacacacacacacacttacacacacacacacacttacacacacacacacacacacacacacggaaaaTGGAAACGGCCGCTTCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACACTCGCTATACTTGAACGGCAGCGAGGTGCAGTATCCACCGCACGTCAAATCAGCAAACGCCAGGAAAATATTCAAAACAAAAATCCTGTCTGACAACCCAGAAACTTTAGTGGCAGATTTCACTGGAATTCTGCAAAGAAATTTTAAAAGTCCATCGCAGCACGGTGAACCTGGCGTGCAGAGCAGAGCTCGGCCAGTTTCCTCTCTCCCTATCCATCATAACCAGAGCTTTAAAATTCCACTCTCACCTGTCCCAATCCCACCCAGACTCATATCACCACACAGCATACCTTAATACCTGCACACACCCAGAAACAgaccctctcacacacattaaacaccaccaccaccttcacACCACCACCTGCTAcaccctcaaacacacacacctccaaaccATCCACAAAACACAGCAATCAGACTATATTAATCACTGGCTTCATGAAATTTCCTCCATTAATAAATTAGAATGTTACAGATCATTAAATAGAGAATACACCCTCGCAGATTACCTGACTAAAATTAAAAACCCCAGAGAAAGACACACGCTGACGATGTACAGACTCAGTGCCCACAGCCTGGAGATAGAGAGCGGGAGACAGAGGAAACACTGGAGACCCAGAGCCGAGCGAGTGTGTGATCACTGCAGCacttcctctcctcctgctcTAAATACACCCAGCTCAGACTCCAGTTCCTACAGAACATCACATCCACCATCCCATCGCTCAGATTAATAACAGAGGAAGATCTGATCAGACTGTATttaggagagattccagaatgTGTTGGATTATCTGCTAAATATGTACACAACTGCCACACCCTGAGAAACCAGAGCCCCACCCTACACTAAACAACCCtgcttatataattatatatatatattat

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU219094 True 1079 TUCP 0.46 4 30315606 30325858

Neighbor

gene id symbol gene type direction distance location
mapk6 mapk6 coding downstream 130071 30145969 ~ 30185535 (-)
LOC111194848 NA coding downstream 448814 29862429 ~ 29866792 (-)
LOC111194847 NA coding downstream 458059 29854309 ~ 29857547 (-)
LOC111194846 NA coding downstream 467967 29839253 ~ 29847639 (-)
LOC111194845 NA coding downstream 497074 29817031 ~ 29818532 (-)
LOC111194849 NA coding upstream 309663 30635521 ~ 30640686 (-)
LOC111194850 NA coding upstream 331514 30657372 ~ 30658445 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding upstream 465934 30791792 ~ 30845637 (-)
fam110d LOC108426366 coding upstream 704621 31030479 ~ 31068087 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding upstream 1233312 31559170 ~ 31583047 (-)
G161690 NA non-coding downstream 26461 30288838 ~ 30289145 (-)
G161674 NA non-coding downstream 143970 30170942 ~ 30171636 (-)
G161640 NA non-coding downstream 183472 30027011 ~ 30132134 (-)
G161645 NA non-coding downstream 314608 29999746 ~ 30000998 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding downstream 331924 29975354 ~ 29983682 (-)
G161717 NA non-coding upstream 27834 30353692 ~ 30371064 (-)
G161719 NA non-coding upstream 46224 30372082 ~ 30384808 (-)
G161725 tmod3,LOC108264495,LOC108440576 non-coding upstream 69112 30394970 ~ 30398157 (-)
G161880 NA non-coding upstream 349541 30675399 ~ 30680028 (-)
G161871 NA non-coding upstream 364189 30690047 ~ 30695175 (-)
LOC103037190 NA other downstream 1374219 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1662659 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2736688 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 3196353 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3969897 26342351 ~ 26345709 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 373312 30699170 ~ 30781708 (-)
tap1 NA other upstream 2326110 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 3772070 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4074805 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 5813045 36138903 ~ 36140897 (-)

Expression


Co-expression Network