G161880


Basic Information

Item Value
gene id G161880
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30675399 ~ 30680028 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219337
TTGTTAGTCAGTGGCtgactaaatacttttttgcCCCACTGTGTCGTAAGACATTTCTCTACAATACATCACAGCATCTGTGACAGCATTATTCTGTTACACAGGCTCACTGAGGCACCATTATTTACATAAAACCCTGCGTGAAGGGACTGAGTGAATTTAgtgtagaatgtgtgtaagtgtgtgagagtttcACTGTCAGAGGAGACGCTGTAAAAGGATATCATCCCAGCCAgacagtccacatacactcctactctcctacagcaggagaaagagtgaggaagCTCAGTGTTGGTTTTATTGTGCTGAACTGAGTATCCGTTATCACGGCAGATCAAACCCCAGGAATTTACACTTCCGCCAAACCCACAGTCTGATTTCTCTCCTTTcctgctgatggttttataactCACAGCTACGATCACCCTCTTTCCGCTCCACtcagcctcccagtaacagATTCTCTCTACTCATCACCTGCTGGTACACATCAAACctctctggatgatcaggataGGGCTGATACTCTCCACACTCCACCCTCCTGTTCCCCTGACTCAGAGAAAGatgagtgtgtgctgtgttctgGTCCAGCGTTAGATCACAGCAATCTGAACACAAACAGAGATATTAGAGGAGAAACACTGCGCTGATAATAtcatttttg
>TU219340
aaaaaaaacataatttacgaagaaatgtatataaaaaaataaaaattacactacaaaaatacagaaacaactGAAACGATAAAAAACAAATCCCCAAGAGTTGTGTAAAGCAAAATTAGTGAAGTCATTACACAATTTAGAATAGGTCTTTAGGCTACACAAAACattttcatgaagttctttacacaGAATCATAAAGATCtcaccagtttcagtccctttcataaggagccatttaagggctctgtcacttttatgcaaataagctgttgctggccatacTCCATCTATATGCTGAGTGTTACCACACGTTAgtattagcttgtgctaaacagCAAAAcgaaacaagctagttcatgcttaactgcgatatAAACAGCAaattcattatttgaaagttcgTACATTTCCCTCATCTGCCGACTTGCCACGGACAtcaggtatagatccctccctctgACGAAATCTGtaggctaatcctgctgtgtactgactgaggttctcaaccaaaatgacagAAATGGCAGATCTTCTACTAATTTAATGGGTGGGGCTCTAGTGGGGGTTAACAGGTGAGTGATGGCACAaacgtcacaataaggaagcATCCAAACGACTTATAGAAGAACAtttataggggcagtcgagACTCAAGTGGAAATACTTTTGGCATAATACTGTATGTCTCCTTTAAGAGGGGTTGTCCTTGTTTTGATAGTTCTATAACATTTGCTAAGCTAAGAAATACTTCATATCATACATATCTATTTCATAGCGCTGTACAaataaaagtaatctgattaactTAATTAATATAGAAGAAAATATGATGCAAAGATGCTTGTGAAATCTTTTAGTGCTTCTTCAATTGGTACAAAGGTTATTATGCCCTGAAGAAACAAATATGACTTGAAAGACAGCATATTATAAAGCGATCTTAACTGAGAAGGAAATGTGGTTAGGTAAATGGACGGTGACGAAAGCAGTaacacaacatttttgcaagGCAGGGTGTGAGTGTTTTACTTATTAACTACTGCTGTAGCTGTTGCAAAATGCTGCTTTtgattctgcttttttttctgattttcctGATGGAAAATAATCTAGTGACCCTACAAGATTCCCTGGTTTCTGTGAGTGATGACAgattaagtattttaaaacctgtacctttacatttttacttgagtaaaaagctcaAGTGGCAGGACCAGTGATGATGCTGTAACTTTTCCTCTCGCAAAACAGAGTGCGATCAGCAAGATGGCGGCCCACATATCTTTacttctttctttaaaaaatccaAACTAACACAATACAACATCCTGGAAGTGCTAGAAGAAGAACAAAACTCGTTGTGTTTGGAGGAAGAAGAATGCTGAGTTGCATCCCAACAACACCATAAAAAGgcctactgtgaagcatggggttGGAAGCATCATGCTTTGTGGCTGCTTTTCTGCAAAGGGCAGAGCATGACTGGAAAAATGAACGGGACCAGGTATTGTGAGATTTTAAGCCAAAACCTTCATTCCTCAGTGAAAGCATTGGAGATGGAACATGGCTGGGTCTTTCAGCATAACAATGATCCCAAACACACCGCGCGGAGAATAAAGAATTGGCTCTGTAATAAGCATTTTAAGGTcctggagtggcctagccagtctccagacctcAACGCCATAGAAAATTATTGTCTGTCATGGCGAGCGTTTGGAGAAGAATTAGCTTGCTGAGATGGATGCATCAATATATGTTGTTGATATATTGGGGTTTTATGATTACCAGACAGAGCATTTCTTCATAGACTGTCTTGCCCTTTTCTAAAAGTGAGTGCTTTTACATGCagtttgtaatctgattactgcagattATCAAAGATGGTATTCTGATTcacatgtttttcatgattgtGGGTAATCAGATATGGGAAATCTCAGAGTTATCATACCACAggtagttccgaccctgcaaggtgattggctgagatgcGTTCCATGAGTGatattatcagccggtaatgcactggaACCGAAGCTCTCCGtctattactccgccacatacaggtaacctagcaatgatgcagcgcttacaaaccaaacagtgcagctaaaaacagagcagcaatggaactattttagctggcggagtttttataaccaaatatattgtattttctcatcctcttcaACTCTTCTCTCATCTTTTTTAGTAGTAGAACTTGCACAATCAGTCGTTGTTAGTCAGTGGCtgactaaatacttttttgcCCCACTGTGTCGTAAGACATTTCTCTACAATACATCACAGCATCTGTGACAGCATTATTCTGTTACACAGGCTCACTGAGGCACCATTATTTACATAAAACCCTGCGTGAAGGGACTGAGTGAATTTAgtgtagaatgtgtgtaagtgCGTGAGAGTTTCACTGTCAGAGGAGACGCTGTAAAAGGATATCATCCCAGCCAgacagtccacatacactcctactctcctacagcaggagaaagagtgaggaagCTCAGTGTTGGTTTTATTGTGCTGAACTGAGTATCCGTTATCACGGCAGATCAAACCCCAGGAATTTACACTTCCGTCAAACCCACAGTCTGATTTCTCTCCTTTcctgctgatggttttataactCACAGCTACGATCACCCTCTTGCCGCTCCACTCAGCCTCCAGTAACAGCGGAAGGTCAGATTCTCTCTACTCATCACCTGCTGGTACACATCAAACctctctggatgatcaggataGGGCTGATACTCTCCACACTCCACCCTCCTGTTCCCCTGACTCAGAGAAAGatgagtgtgtgctgtgttctgGTCCAGCGTTAGATCACAGCAATCTGAACACAAACAGAGATATTAGAGGAGAAACACTGCGCTGATAATAtcatttttg
>TU219341
aaaaaaaacataatttacgaagaaatgtatataaaaaaataaaaattacactacaaaaatacagaaacaactGAAACGATAAAAAACAAATCCCCAAGAGTTGTGTAAAGCAAAATTAGTGAAGTCATTACACAATTTAGAATAGGTCTTTAGGCTACACAAAACattttcatgaagttctttacacaGAATCATAAAGATCtcaccagtttcagtccctttcataaggagccatttaagggctctgtcacttttatgcaaataagctgttgctggccatacTCCATCTATATGCTGAGTGTTACCACACGTTAgtattagcttgtgctaaacagCAAAAcgaaacaagctagttcatgcttaactgcgatatAAACAGCAaattcattatttgaaagttcgTACATTTCCCTCATCTGCCGACTTGCCACGGACAtcaggtatagatccctccctctgACGAAATCTGtaggctaatcctgctgtgtactgactgaggttctcaaccaaaatgacagAAATGGCAGATCTTCTACTAATTTAATGGGTGGGGCTCTAGTGGGGGTTAACAGGTGAGTGATGGCACAaacgtcacaataaggaagcATCCAAACGACTTATAGAAGAACAtttataggggcagtcgagACTCAAGTGGAAATACTTTTGGCATAATACTGTATGTCTCCTTTAAGAGGGGTTGTCCTTGTTTTGATAGTTCTATAACATTTGCTAAGCTAAGAAATACTTCATATCATACATATCTATTTCATAGCGCTGTACAaataaaagtaatctgattaactTAATTAATATAGAAGAAAATATGATGCAAAGATGCTTGTGAAATCTTTTAGTGCTTCTTCAATTGGTACAAAGGTTATTATGCCCTGAAGAAACAAATATGACTTGAAAGACAGCATATTATAAAGCGATCTTAACTGAGAAGGAAATGTGGTTAGGTAAATGGACGGTGACGAAAGCAGTaacacaacatttttgcaagGCAGGGTGTGAGTGTTTTACTTATTAACTACTGCTGTAGCTGTTGCAAAATGCTGCTTTtgattctgcttttttttctgattttcctGATGGAAAATAATCTAGTGACCCTACAAGATTCCCTGGTTTCTGTGAGTGATGACAgattaagtattttaaaacctgtacctttacatttttacttgagtaaaaagctcaAGTGGCAGGACCAGTGATGATGCTGTAACTTTTCCTCTCGCAAAACAGAGTGCGATCAGCAAGATGGCGGCCCACATATCTTTacttctttctttaaaaaatccaAACTAACACAATACAACATCCTGGAAGTGCTAGAAGAAGAACAAAACTCGTTGTGTTTGGAGGAAGAAGAATGCTGAGTTGCATCCCAACAACACCATAAAAAGgcctactgtgaagcatggggttGGAAGCATCATGCTTTGTGGCTGCTTTTCTGCAAAGGGCAGAGCATGACTGGAAAAATGAACGGGACCAGGTATTGTGAGATTTTAAGCCAAAACCTTCATTCCTCAGTGAAAGCATTGGAGATGGAACATGGCTGGGTCTTTCAGCATAACAATGATCCCAAACACACCGCGCGGAGAATAAAGAATTGGCTCTGTAATAAGCATTTTAAGGTcctggagtggcctagccagtctccagacctcAACGCCATAGAAAATTATTGTCTGTCATGGCGAGCGTTTGGAGAAGAATTAGCTTGCTGAGATGGATGCATCAATATATGTTGTTGATATATTGGGGTTTTATGATTACCAGACAGAGCATTTCTTCATAGACTGTCTTGCCCTTTTCTAAAAGTGAGTGCTTTTACATGCagtttgtaatctgattactgcagattATCAAAGATGGTATTCTGATTcacatgtttttcatgattgtGGGTAATCAGATATGGGAAATCTCAGAGTTATCATACCACAggtagttccgaccctgcaaggtgattggctgagatgcGTTCCATGAGTGatattatcagccggtaatgcactggaACCGAAGCTCTCCGtctattactccgccacatacaggtaacctagcaatgatgcagcgcttacaaaccaaacagtgcagctaaaaacagagcagcaatggaactattttagctggcggagtttttataaccaaatatattgtattttctcatcctcttcaACTCTTCTCTCATCTTTTTTAGTAGTAGAACTTGCACAATCAGTCGTTGTTAGTCAGTGGCtgactaaatacttttttgcCCCACTGTGTCGTAAGACATTTCTCTACAATACATCACAGCATCTGTGACAGCATTATTCTGTTACACAGGCTCACTGAGGCACCATTATTTACATAAAACCCTGCGTGAAGGGACTGAGTGAATTTAgtgtagaatgtgtgtaagtgCGTGAGAGTTTCACTGTCAGAGGAGACGCTGTAAAAGGATATCATCCCAGCCAgacagtccacatacactcctactctcctacagcaggagaaagagtgaggaagCTCAGTGTTGGTTTTATTGTGCTGAACTGAGTATCCGTTATCACGGCAGATCAAACCCCAGGAATTTACACTTCCGTCAAACCCACAGTCTGATTTCTCTCCTTTcctgctgatggttttataactCACAGCTACGATCACCCTCTTGCCGCTCCACTCAGCCTCCAGTAACAGCGGAAGGTCAGATTCTCTCTACTCATCACCTGCTGGTACACATCAAACctctctggatgatcaggataGGGCTGATACTCTCCACACTCCACCCTCCTGTTCCCCTGACTCAGAGAAAGatgagtgtgtgctgtgttctgGTCCAGCGTTAGATCACAGCAATCTGAACACAAACAGAGATATTAGAGGAGAAACACTGCGCTGATAATAtcatttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219337 False 670 lncRNA 0.45 2 30675399 30677789
TU219340 True 2919 lncRNA 0.40 2 30675399 30680028
TU219341 False 2919 lncRNA 0.40 2 30675399 30680028

Neighbor

gene id symbol gene type direction distance location
LOC111194850 NA coding downstream 16954 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 34713 30635521 ~ 30640686 (-)
mapk6 mapk6 coding downstream 489864 30145969 ~ 30185535 (-)
LOC111194848 NA coding downstream 808607 29862429 ~ 29866792 (-)
LOC111194847 NA coding downstream 817852 29854309 ~ 29857547 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding upstream 111764 30791792 ~ 30845637 (-)
fam110d LOC108426366 coding upstream 350451 31030479 ~ 31068087 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding upstream 879142 31559170 ~ 31583047 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 1517557 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 1642857 32322885 ~ 32342049 (-)
G161725 tmod3,LOC108264495,LOC108440576 non-coding downstream 277242 30394970 ~ 30398157 (-)
G161719 NA non-coding downstream 290591 30372082 ~ 30384808 (-)
G161717 NA non-coding downstream 304335 30353692 ~ 30371064 (-)
G161690 NA non-coding downstream 386254 30288838 ~ 30289145 (-)
G161674 NA non-coding downstream 503763 30170942 ~ 30171636 (-)
G161871 NA non-coding upstream 10019 30690047 ~ 30695175 (-)
G161876 NA non-coding upstream 15506 30695534 ~ 30698973 (-)
G161875 NA non-coding upstream 104063 30784091 ~ 30785153 (-)
G161890 NA non-coding upstream 165694 30845722 ~ 30846175 (-)
G161898 NA non-coding upstream 194999 30875027 ~ 30878562 (-)
G161711 NA other downstream 349541 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 1734012 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 2022452 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 3096481 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 3556146 27109707 ~ 27119253 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 19142 30699170 ~ 30781708 (-)
tap1 NA other upstream 1971940 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 3417900 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 3720635 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 5458875 36138903 ~ 36140897 (-)

Expression


Co-expression Network