G161898


Basic Information

Item Value
gene id G161898
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30875027 ~ 30878562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219362
tctgTAACATTAAAACTATATAATTGGCATAAAATGGATCTGAAAAGGATTCTTTATAGTATATTTatggaatattatattattaaaacccaaaaatgttATCCTGCACTAGCTGATCAGAAACTGGCTCATTGTCCAGTGGTTCAGGAGCGTAATTAGACCCATTTAAACACTAAAACGTGCATATTAATTTTTCACTGAACTAATACACTATAAAAATAACAGGAATGCTGAATAAAGGGGATATTCTTttgaaatttttattttattcaaaaccATTCAGAACAAGTAATTTTAGGAGTCACAAAACATCCTTCCAATATTGGAGCGTATAACTTAATAAAAacgacattttaacagtttgaaGAAACTCGTTAATTTCATCCTgcaaatttaattaatcatggttgaTTTTCCTACtcacaatttagtcattttgtttttaactgtgttaataagaacataatgaaaaaaagtaaaatacagtattgttaagtacacaaataaaaaaggaaaatgaaaattaaaaaagaaaaaaaaatggaaaaaactcTTTCCCATaccattttaaaaacacactataGCTGCCTTATGAGAATGTTtggtgtttaaaatatattttaaaaacccaaaatgtaataaaataccaAAACATTCATGGGTGTAAAAACCAATTCAGCCATTTTGGCAAGGTGGGCGGCTTCATTAATGATGGGGCATAAATGGATATGAAAGCAAACAACAATTAAACTATAAACGAtattcttaatataaaacttgGTAAAAAATAGTTATTTCAAACTGTACAGTCACCAAGTACACAGAAGAATTAAACAATTCAATCGCTTCTCATTTGGCGTCTGCTGCAGCTTCAACCTTTTGCGCCTaaagggaagaaaaaagaaaaagagaaagaaagtatcAGTACACAAATACCCACCaatggatatatatttttaaattataatgtgTAAATGCTAGTGTAAATACAGATAACATGTTATCGGGgccaaatttaataaaaaatctaacatAATTAATGATTACTGCCCCCAAATACAATTacaacattatttatataactttttattattaacacatCACTTTATAGCAAATTTACGATTTAAGAAAAATCTTTAGCATATTGTCAGTAGATATAGCATGCACTAGGGTGTAAAATGCTATAAAATCCTAGAAGAGTACATTTATGCTGTAAAGTCTGCAGTGTAGCCAGGTGTCTTCAGGATACCTGGTCTGCCTTGGCCTCTCCATTTTCAGCAGGGTTGGCCTTCTTCCCTTTGGCTGCCTTCTGCAAAttcTTGGGGGCAGCTTTTTTCGGCTTTGGGGCGGGTTTAGGAGGGGCTGGTctctataaataaaaacagaagacataaacattaaataaatgatcaaaaactTAAAACACGTTGCTTATACAATCTTAAAATGCTAAATCGATAAAAAGAGAATTATGTtccttaaaatataataaaaaagtgcaaTAACATACAGCAGACAGCCTTGCGGAGCGTCTAGttggctgaaaaagaaaaaaaggagaaaacatTTAGAATCAAAGCACTAATCACATTAATGCACAATGGAGAGGtcataaaataattcaaattaaattctgcttttggaaaaaaaagaatatttctTGGCTTatcttttatttagtttaattttaaaaaaaaaactttgataaactttttattttcaacACTAACCTCCTCCTTGCCTTTGGCAGCCTTCTCTCCGTCAGCCTGTGGATAAACAAAAGGGCAGAGACGTTAAGGGCTGAAAGTGCATCTTTCAAATCAACACAATGCATACAAACCaaatgatatataataatatatcttaaattatattaaataatatttgcaCAAAAATCAGagtgttttaaacatttatctatctatttaaacTCCTTGTGCATCTGTTTTGGCGCgtattttagctttagcttgttGTTTTCTCCTCAGCTCTAGCGCCTCGGTTTCCCGCgctaattcaaattcaaattctaGGGCGCGCGACGCCTCGCTGCTGCTTCCTCTCGCCCTCGagtccagcagcagcacagctcgCGCCACAGGATTAAACGGTCACAATTTTTCAAAATTGAATTCGAAAAACGCCGTTAAAAACCGTTGCACTACGGCATTTAAACGGATTAAcgtattagaaaaaatataaacgCATTTATAGGCTTATATTAGACcgaaaaatagtatttttaaatattaaataggcatatttttaaacaataaacactgcaagctttattttttgcgcaaataaaaaatataaagcacgaatatttgagttaaaataatagaaaatgtagtaaaacacaataatatcacaataatagGTTTAACCTAGCTTCTCAACTAGGTTAAGctacaacattaaaaccacaacGCAGCAACCATTTTTCCCTCCCTTGCGACTCACAGAAGCCAACATGTTCAAAAATCCCactatttaacttatttaaacatgcaaaaTTCGCCTTTTGCTCTAAGTTATCCATCGTAAGTGGCTTTATTTGaattttaatcttatttatatttgattaaatcCGTAAAATCCCTCCCAGCAGCGCCAAAAAAAATGGGCTAGCTCCAAGCAAACACTCGACGTCCAAGGAATTAACGAAGATAAAACCTCACATTCTCAGCTCTACAGGCTTTTAAAAAGCGTTTTCTCAATTTTAGCGCCATTATCTCTttgaaaaacactgtaattcGTGCAAAACTACGACATTTATGAGCCGGTACGCGTTTTTTTCGCCCAATACAACGTCACAGGATGACAGCGGGGCTGACAGCAGCTTTGTCTGGAGACATCGGACAAATAAACACCCGAATAAACGCGTTTTAGGCGAAAAAACGAGCGAAAAAGGGCGCGTTTCTGCAAAAATGCGCAAATAATCGTATTAATAAGGCATGCGCGCCATTCTTACCTTTCTTTTGGGCATCTTGGCGCTTGAAAAACCGtgtaaaaaaagagggaaatgtAGGTTTGTTGTTTTTCCTCGGCAAGGCTCTGCACCGCGCTGCTCTCCACACAAAGCTTCAATACAATAACGGCCcaatgtttatttagtttttatattgaaatataagATAGAAACCGGTTTAAACCAGATTTGGCGTTCGGAGCTCGGGCATTGGC
>TU219363
tctgTAACATTAAAACTATATAATTGGCATAAAATGGATCTGAAAAGGATTCTTTATAGTATATTTatggaatattatattattaaaacccaaaaatgttATCCTGCACTAGCTGATCAGAAACTGGCTCATTGTCCAGTGGTTCAGGAGCGTAATTAGACCCATTTAAACACTAAAACGTGCATATTAATTTTTCACTGAACTAATACACTATAAAAATAACAGGAATGCTGAATAAAGGGGATATTCTTttgaaatttttattttattcaaaaccATTCAGAACAAGTAATTTTAGGAGTCACAAAACATCCTTCCAATATTGGAGCGTATAACTTAATAAAAacgacattttaacagtttgaaGAAACTCGTTAATTTCATCCTgcaaatttaattaatcatggttgaTTTTCCTACtcacaatttagtcattttgtttttaactgtgttaataagaacataatgaaaaaaagtaaaatacagtattgttaagtacacaaataaaaaaggaaaatgaaaattaaaaaagaaaaaaaaatggaaaaaactcTTTCCCATaccattttaaaaacacactataGCTGCCTTATGAGAATGTTtggtgtttaaaatatattttaaaaacccaaaatgtaataaaataccaAAACATTCATGGGTGTAAAAACCAATTCAGCCATTTTGGCAAGGTGGGCGGCTTCATTAATGATGGGGCATAAATGGATATGAAAGCAAACAACAATTAAACTATAAACGAtattcttaatataaaacttgGTAAAAAATAGTTATTTCAAACTGTACAGTCACCAAGTACACAGAAGAATTAAACAATTCAATCGCTTCTCATTTGGCGTCTGCTGCAGCTTCAACCTTTTGCGCCTaaagggaagaaaaaagaaaaagagaaagaaagtatcAGTACACAAATACCCACCaatggatatatatttttaaattataatgtgTAAATGCTAGTGTAAATACAGATAACATGTTATCGGGgccaaatttaataaaaaatctaacatAATTAATGATTACTGCCCCCAAATACAATTacaacattatttatataactttttattattaacacatCACTTTATAGCAAATTTACGATTTAAGAAAAATCTTTAGCATATTGTCAGTAGATATAGCATGCACTAGGGTGTAAAATGCTATAAAATCCTAGAAGAGTACATTTATGCTGTAAAGTCTGCAGTGTAGCCAGGTGTCTTCAGGATACCTGGTCTGCCTTGGCCTCTCCATTTTCAGCAGGGTTGGCCTTCTTCCCTTTGGCTGCCTTCTTGGGGGCAGCTTTTTTCGGCTTTGGGGCGGGTTTAGGAGGGGCTGGTctctataaataaaaacagaagacataaacattaaataaatgatcaaaaactTAAAACACGTTGCTTATACAATCTTAAAATGCTAAATCGATAAAAAGAGAATTATGTtccttaaaatataataaaaaagtgcaaTAACATACAGCAGACAGCCTTGCGGAGCGTCTAGttggctgaaaaagaaaaaaaggagaaaacatTTAGAATCAAAGCACTAATCACATTAATGCACAATGGAGAGGtcataaaataattcaaattaaattctgcttttggaaaaaaaagaatatttctTGGCTTatcttttatttagtttaattttaaaaaaaaaactttgataaactttttattttcaacACTAACCTCCTCCTTGCCTTTGGCAGCCTTCTCTCCGTCAGCCTTCTTTTGGGCATCTTGGCGCTTGAAAAACCGtgtaaaaaaagagggaaatgtAGGTTTGTTGTTTTTCCTCGGCAAGGCTCTGCACCGCGCTGCTCTCCACACAAAGCTTCAATACAATAACGGCCcaatgtttatttagtttttatattgaaatataagATAGAAACCGGTTTAAACCAGATTTGGCGTTCGGAGCTCGGGCATTGGC
>TU219364
tctgTAACATTAAAACTATATAATTGGCATAAAATGGATCTGAAAAGGATTCTTTATAGTATATTTatggaatattatattattaaaacccaaaaatgttATCCTGCACTAGCTGATCAGAAACTGGCTCATTGTCCAGTGGTTCAGGAGCGTAATTAGACCCATTTAAACACTAAAACGTGCATATTAATTTTTCACTGAACTAATACACTATAAAAATAACAGGAATGCTGAATAAAGGGGATATTCTTttgaaatttttattttattcaaaaccATTCAGAACAAGTAATTTTAGGAGTCACAAAACATCCTTCCAATATTGGAGCGTATAACTTAATAAAAacgacattttaacagtttgaaGAAACTCGTTAATTTCATCCTgcaaatttaattaatcatggttgaTTTTCCTACtcacaatttagtcattttgtttttaactgtgttaataagaacataatgaaaaaaagtaaaatacagtattgttaagtacacaaataaaaaaggaaaatgaaaattaaaaaagaaaaaaaaatggaaaaaactcTTTCCCATaccattttaaaaacacactataGCTGCCTTATGAGAATGTTtggtgtttaaaatatattttaaaaacccaaaatgtaataaaataccaAAACATTCATGGGTGTAAAAACCAATTCAGCCATTTTGGCAAGGTGGGCGGCTTCATTAATGATGGGGCATAAATGGATATGAAAGCAAACAACAATTAAACTATAAACGAtattcttaatataaaacttgGTAAAAAATAGTTATTTCAAACTGTACAGTCACCAAGTACACAGAAGAATTAAACAATTCAATCGCTTCTCATTTGGCGTCTGCTGCAGCTTCAACCTTTTGCGCCTaaagggaagaaaaaagaaaaagagaaagaaagtatcAGTACACAAATACCCACCaatggatatatatttttaaattataatgtgTAAATGCTAGTGTAAATACAGATAACATGTTATCGGGgccaaatttaataaaaaatctaacatAATTAATGATTACTGCCCCCAAATACAATTacaacattatttatataactttttattattaacacatCACTTTATAGCAAATTTACGATTTAAGAAAAATCTTTAGCATATTGTCAGTAGATATAGCATGCACTAGGGTGTAAAATGCTATAAAATCCTAGAAGAGTACATTTATGCTGTAAAGTCTGCAGTGTAGCCAGGTGTCTTCAGGATACCTGGTCTGCCTTGGCCTCTCCATTTTCAGCAGGGTTGGCCTTCTTCCCTTTGGCTGCCTTCTGCAAAttcaataaatacacatttttattatttcataataACACTTTAGTATATTTATCAACATACATAACCCATTATCTGCTCCTACATCAGTTTGGCTAACACTtacaaacataaataattacaatacaACTGTCACAtgtaatacaatattattaacctattattgttatttcattACAAGCTACATTATAAATTACATAGGACTCATGTAGTAGGTATAAATGTGCATTTATAAAGtgtacataaacatataaaaacttaaatacaaaatttaTGATACTTATCTATGTGTGtacatatattaacaataattttaataaaatcatgTTAAATTACTACGTTTCTTTGTTAATACCTTGGGGGCAGCTTTTTTCGGCTTTGGGGCGGGTTTAGGAGGGGCTGGTctctataaataaaaacagaagacataaacattaaataaatgatcaaaaactTAAAACACGTTGCTTATACAATCTTAAAATGCTAAATCGATAAAAAGAGAATTATGTtccttaaaatataataaaaaagtgcaaTAACATACAGCAGACAGCCTTGCGGAGCGTCTAGttggctgaaaaagaaaaaaaggagaaaacatTTAGAATCAAAGCACTAATCACATTAATGCACAATGGAGAGGtcataaaataattcaaattaaattctgcttttggaaaaaaaagaatatttctTGGCTTatcttttatttagtttaattttaaaaaaaaaactttgataaactttttattttcaacACTAACCTCCTCCTTGCCTTTGGCAGCCTTCTCTCCGTCAGCCTTTCTTTTGGGCATCTTGGCGCTTGAAAAACCGtgtaaaaaaagagggaaatgtAGGTTTGTTGTTTTTCCTCGGCAAGGCTCTGCACCGCGCTGCTCTCCACACAAAGCTTCAATACAATAACGGCCcaatgtttatttagtttttatattgaaatataagATAGAAACCGGTTTAAACCAGATTTGGCGTTCGGAGCTCGGGCATTGGC
>TU219366
tctgTAACATTAAAACTATATAATTGGCATAAAATGGATCTGAAAAGGATTCTTTATAGTATATTTatggaatattatattattaaaacccaaaaatgttATCCTGCACTAGCTGATCAGAAACTGGCTCATTGTCCAGTGGTTCAGGAGCGTAATTAGACCCATTTAAACACTAAAACGTGCATATTAATTTTTCACTGAACTAATACACTATAAAAATAACAGGAATGCTGAATAAAGGGGATATTCTTttgaaatttttattttattcaaaaccATTCAGAACAAGTAATTTTAGGAGTCACAAAACATCCTTCCAATATTGGAGCGTATAACTTAATAAAAacgacattttaacagtttgaaGAAACTCGTTAATTTCATCCTgcaaatttaattaatcatggttgaTTTTCCTACtcacaatttagtcattttgtttttaactgtgttaataagaacataatgaaaaaaagtaaaatacagtattgttaagtacacaaataaaaaaggaaaatgaaaattaaaaaagaaaaaaaaatggaaaaaactcTTTCCCATaccattttaaaaacacactataGCTGCCTTATGAGAATGTTtggtgtttaaaatatattttaaaaacccaaaatgtaataaaataccaAAACATTCATGGGTGTAAAAACCAATTCAGCCATTTTGGCAAGGTGGGCGGCTTCATTAATGATGGGGCATAAATGGATATGAAAGCAAACAACAATTAAACTATAAACGAtattcttaatataaaacttgGTAAAAAATAGTTATTTCAAACTGTACAGTCACCAAGTACACAGAAGAATTAAACAATTCAATCGCTTCTCATTTGGCGTCTGCTGCAGCTTCAACCTTTTGCGCATTTATGCTGTAAAGTCTGCAGTGTAGCCAGGTGTCTTCAGGATACCTGGTCTGCCTTGGCCTCTCCATTTTCAGCAGGGTTGGCCTTCTTCCCTTTGGCTGCCTTCTGCAAAttcaataaatacacatttttattatttcataataACACTTTAGTATATTTATCAACATACATAACCCATTATCTGCTCCTACATCAGTTTGGCTAACACTtacaaacataaataattacaatacaACTGTCACAtgtaatacaatattattaacctattattgttatttcattACAAGCTACATTATAAATTACATAGGACTCATGTAGTAGGTATAAATGTGCATTTATAAAGtgtacataaacatataaaaacttaaatacaaaatttaTGATACTTATCTATGTGTGtacatatattaacaataattttaataaaatcatgTTAAATTACTACGTTTCTTTGTTAATACCTTGGGGGCAGCTTTTTTCGGCTTTGGGGCGGGTTTAGGAGGGGCTGGTctAGCAGACAGCCTTGCGGAGCGTCTAGttggCTCCTCCTTGCCTTTGGCAGCCTTCTCTCCGTCAGCCTTCTTTTGGGCATCTTGGCGCTTGAAAAACCGtgtaaaaaaagagggaaatgtAGGTTTGTTGTTTTTCCTCGGCAAGGCTCTGCACCGCGCTGCTCTCCACACAAAGCTTCAATACAATAACGGCCcaatgtttatttagtttttatattgaaatataagATAGAAACCGGTTTAAACCAGATTTGGCGTTCGGAGCTCGGGCATTGGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031327 negative regulation of cellular biosynthetic process biological_process
GO:1902679 negative regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051253 negative regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1903507 negative regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010558 negative regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:2000113 negative regulation of cellular macromolecule biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219362 True 3186 lncRNA 0.34 2 30875027 30878562
TU219363 False 1968 lncRNA 0.32 3 30875027 30878562
TU219364 False 2328 lncRNA 0.30 2 30875027 30878562
TU219366 False 1678 lncRNA 0.33 5 30875027 30878562

Neighbor

gene id symbol gene type direction distance location
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 29390 30791792 ~ 30845637 (-)
LOC111194850 NA coding downstream 216582 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 234341 30635521 ~ 30640686 (-)
mapk6 mapk6 coding downstream 689492 30145969 ~ 30185535 (-)
LOC111194848 NA coding downstream 1008235 29862429 ~ 29866792 (-)
fam110d LOC108426366 coding upstream 151917 31030479 ~ 31068087 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding upstream 680608 31559170 ~ 31583047 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 1319023 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 1444323 32322885 ~ 32342049 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 1712334 32590896 ~ 32599250 (-)
G161890 NA non-coding downstream 28852 30845722 ~ 30846175 (-)
G161875 NA non-coding downstream 89874 30784091 ~ 30785153 (-)
G161876 NA non-coding downstream 176054 30695534 ~ 30698973 (-)
G161871 NA non-coding downstream 179852 30690047 ~ 30695175 (-)
G161880 NA non-coding downstream 194999 30675399 ~ 30680028 (-)
LOC111194811 NA non-coding upstream 201438 31080000 ~ 31081266 (-)
LOC111194813 NA non-coding upstream 209028 31087590 ~ 31088350 (-)
G161933 NA non-coding upstream 302070 31180632 ~ 31208497 (-)
LOC111194815 NA non-coding upstream 362063 31240625 ~ 31244245 (-)
G161954 NA non-coding upstream 457084 31335646 ~ 31335881 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 93319 30699170 ~ 30781708 (-)
G161711 NA other downstream 549169 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 1933640 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 2222080 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 3296109 27429941 ~ 27578918 (-)
tap1 NA other upstream 1773406 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 3219366 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 3522101 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 5260341 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 5460818 36339380 ~ 36354701 (-)

Expression


Co-expression Network