LOC111194848


Basic Information

Item Value
gene id LOC111194848
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29862429 ~ 29866792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679993.1
ATGTGGGCCGTAAGGCATCCAGTCAAGAACACCTTGATAAGTTTGCATGATTATCCAGACTCCATTGATGATCCATTTGAGGGATGCAAAGACAAAATGCGTGAGCTGATTAAGACTAAATACCTGGAGAAAGAGTTGGAAGAAAATCAATTATTTGGGACTCTGTGGAAAAAAGTCAAACAACTGATTAACTTAAAAGGAGAATCTGATGATGAGTTGAGAAAACTAGCCCTGTCTGCATACACTGGACCCAGCGTTTACCAAGTTCTAAACACTAAAATGCGTGATGAAAAGACACGCTACAAGACTGAGTTTGGCCTGATTTCTTTACACTTTTTGATAACGGATGGCATTCAAAGCCTTAACCCTGATAAACAATGCCAAACCACTTACCGCTTTGGGAGCgacaaatatgtaataaaagGTGATAAAATAAGATTTGGTAGTTTTGCATCTTCTTCACGTAACCCccgactgaaaacatttggtaGAAAGACTTGTTTTATTATTGAGACATGCTTTGGTGCTGATATATCTAAACTGTCTCTCTCTAAAACTGAGGCTGAAGTGAACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679993.1 True 576 mRNA 0.39 3 29862429 29866792

Neighbor

gene id symbol gene type direction distance location
LOC111194847 NA coding downstream 4882 29854309 ~ 29857547 (-)
LOC111194846 NA coding downstream 14790 29839253 ~ 29847639 (-)
LOC111194845 NA coding downstream 43897 29817031 ~ 29818532 (-)
LOC111194844 NA coding downstream 79022 29777174 ~ 29783407 (-)
LOC111194843 NA coding downstream 96925 29761668 ~ 29765504 (-)
mapk6 mapk6 coding upstream 279177 30145969 ~ 30185535 (-)
LOC111194849 NA coding upstream 768729 30635521 ~ 30640686 (-)
LOC111194850 NA coding upstream 790580 30657372 ~ 30658445 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding upstream 925000 30791792 ~ 30845637 (-)
fam110d LOC108426366 coding upstream 1163687 31030479 ~ 31068087 (-)
G161588 NA non-coding downstream 45830 29813602 ~ 29816599 (-)
LOC111194805 NA non-coding downstream 237138 29621059 ~ 29625291 (-)
G161547 NA non-coding downstream 363102 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 394128 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 467916 29279743 ~ 29394513 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 108562 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 132954 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 160219 30027011 ~ 30132134 (-)
G161674 NA non-coding upstream 304150 30170942 ~ 30171636 (-)
G161690 NA non-coding upstream 422046 30288838 ~ 30289145 (-)
LOC103037190 NA other downstream 921042 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1209482 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2283511 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2743176 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3516720 26342351 ~ 26345709 (-)
G161711 NA other upstream 448814 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 832378 30699170 ~ 30781708 (-)
tap1 NA other upstream 2785176 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4231136 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4533871 34400663 ~ 34731072 (-)

Expression


Co-expression Network