fam110d (LOC108426366)


Basic Information

Item Value
gene id fam110d
gene name LOC108426366
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31030479 ~ 31068087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679860.1
gagcagcaggagcagcagtgtggctggagctgagctggagcgcAGAGCTCGCGAGCGCTGCTCGAGCTCAGAGACACGCACGAGACCACcggactgaacacacacacacacacacacacacacacactggacgGAACTTCTGTACTGGActgaaggagagacagagaaagagagagagaggaaagagctACTGGAAACACTGAAAGCACTGGAAACACTGGGAGAACTGGAGTTCAAGTCAAACCTCCAAAAACCTTAATCAGAGGTCAAACTGTCTCGAAGTTGGACCAGTCGCTCCAAGCCTGGCTCCAAGAATCCAACAACGacggcggcggcagcagcaATCAGAAAGCAAACAACCAACGCAAAACCAATCTCCACCTCAAGATGACCTTGCCTGGAAAGACTCTTGAGTAGAGTAAGTTCTGTCAGAGTTAGAGGACAAAAAGAAAGACTGGAGCTTTCTATTTCTGCTGCTCTGTGGCGCAAAGAACATCTCATTTGgaacaagtgttttttttggaaGGAGGCGAAAGGATTTCCCCGTGCCCTTCCCATTTTAATCCAGTGGTTGAATAAATACCGTGTGGAGATATCAACTTTTCCTCGTTCCGGAAGTGTCCAGATTGGAGACTAGGCGTAACAAAGGAAGTACAGCATGGATATCTTCAGTAGGAACATGCCCAATTGGATGTTTTGAACTTTTTGCTCTCTACTTTTATAGACTACTTTTATCTCTAAGCAACAACAAGTCTTACGATTATCTCCACACCTCCAAACCACTTGTTGTACAACCACTTGTAGACCAAGCACAGCTGAatagcagctaaatgggtgggacaattggcctatctgaagaaaattagagaaacttAGATATAAAATAATGAGCTGAATGATTGAGCAGCCCTTATTTATCCCCCCGTTGTGTttttttcaacgttttttttatttttgtgtagtgCATTGTAGTTTGAAATCGACTATTAGTCGACACTAATATTTGCAGCCGAagatttttaatagatttttattttattagattatcTTTACTATTTGTTGCAGCCTTATCCAACTCTGACCCCCATTTAAACCCAAATTTCCAAAAAGTTTAAATCAAACTGGCCAAAAAAATGCCTTGCCCATTTTAATCCAGTGGTTGGGTATATACCGTGTGGAGATATCAACTTTTCCTCAATCCGGAAGTGTCCAGATTGAAAACCAGGCGTAACAAAGGAAGTACAAAGAAAGTACAGGAAGTATAGTCATCCCAGAGCAACAAATAAGTTGATTACGATTAACTCCAGACCTCCAAACCACTTGTAGACCTGTAGACCAAGCCTGTAGACCAAGGCTGCCATTGGATGCCGCTGCCTTTTCCCACAAGAACCCTAAGAAGCAATGAAGCCACTAACGCCCATTGGTTCCCCCTCGCCCCTGCGACTCCTCAACAAGGGTCCGGACTACCTTCGGCGGCAGATCGACAGCGGGAGCCGCGGCGGCTCCACCATCAGCGCCGTGGAGAGACTCGAAGCTGACAAAGCCAAATACGTCAAGACCCAGCAGGTGATCAACACCAAGCAGGAGCCCGTACTGGTGCCCTGTGGAACTCCACCGCCCCAGCCACGCCGCAACTTCACAGTACCCGTCACCTCCACGCCGGTCCTGCCACGGCGGCCGCTGGTTACTGCCACGCCCGGTCCACCCAGGTTGgtgttCAACTCAGCCAGCGACGACAATGAGGACGACTCCAGGAAGGAAAACCGGCGAGACCCAGAGCTTCAGAACTGCAACAACTTCAACCGGCTGCCTCCGCTAGTCCCGAGGAGCCCCGTCAGGGCAGCTCTGGTGGCGCCTCATAGTGCCCCCATTCTGCGGAGAAGTACGGGAAAGCGTATGCTGCGGCCAGATTCGCTCGTCATCTACAGGCAGAAGAAAGAGTGCAAGAGTCCCAACAATAGCGGAAGTAGTGGAACCATGAGCTCGGAGGTGAAGGGGTACAGCTTCGTCCGACGCCTCTTTCAGGGGTCCATGAGAGAGAAGAACTCGAAGTCGACAATCAGCGAGGAAAAGGGTTCGTCTCGAGACGGCGACTCGCGCATGTCGTGGTCAATCGACCGGGACATTTCTGATGGCGGCACCGAGACCAGGAGGTCGAGCAGGACGGCAGAATCCAACAACGGCAACAGCGGATTCCTAGAGCCTTCAAATCCCATCGTGAATACCTTCCGAGACGTGCCAGACAACGGGAATGGGAAAATCCAGAACCCTTGGCTTCGGGCGAGCTTGCGACGCTCTGAATCGGACCTTCACCTCCGTGTCTCGGTAGCTCTTTCCGAGCAGGAGCGCTTCTTTGACTTTTGCGGACTTGACCGAGACATGGTGGACCGTCTTGGGGCTGAGAACTTCCTCTCGGGGGGTAGTTCGGCCGACTCGCTCTCGCTTGTCCTCCGCAGcgtaggaggaggaggaggcggctcAGAACCCAGCGAGTTCTCCCGCCATTCAGGGGAAGGGTTGGTCCAAGAGGAAGTAGCCGAGCAGGCGCCCACAGGAGTGTCTATCATCGAGAGGAACGCCCGAGTAATCAAGTGGCTTTACGGCTGCAAGAACGCTACACGGGAAACGGCCAAAGGTCCAAAAGAGTCAACCGTGTAGCCAGCAGTCCTCTCAGACTAGTGGACCTCTGGCTCTTGTTTAAGGACTACATGCATGACGCAGGGTTGTCATACTTCTGATAAAGCTAATAtgctctatttattttattttcatggtggcatttttgtgtgtgagagagactttGAAATATTCAGGAATATTGCGGGTCCTTATTGCAGTAGtttggcaaaaaaaattaaattgcacAGTTCTTCCCTTTAATGGTTGTATATCTGTTTGTTGTCTGAAGTTGTTTGTCGGAAGCTTCCTAAGAGCtaagaggctaatgtagctcaTGTGAAAATGTCATAAATGCCCTAAATATAATCTATTAACTGCGAAtctgaa

Function

NR:

description
PREDICTED: protein FAM110D

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679860.1 True 3006 mRNA 0.49 3 31030479 31068087

Neighbor

gene id symbol gene type direction distance location
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 184842 30791792 ~ 30845637 (-)
LOC111194850 NA coding downstream 372034 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 389793 30635521 ~ 30640686 (-)
mapk6 mapk6 coding downstream 844944 30145969 ~ 30185535 (-)
LOC111194848 NA coding downstream 1163687 29862429 ~ 29866792 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding upstream 491083 31559170 ~ 31583047 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 1129498 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 1254798 32322885 ~ 32342049 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 1522809 32590896 ~ 32599250 (-)
LOC103041900 LOC103041900,LOC107592163,LOC103356858,LOC107688211 coding upstream 1547446 32615533 ~ 32651073 (-)
G161898 NA non-coding downstream 151917 30875027 ~ 30878562 (-)
G161890 NA non-coding downstream 184304 30845722 ~ 30846175 (-)
G161875 NA non-coding downstream 245326 30784091 ~ 30785153 (-)
G161876 NA non-coding downstream 331506 30695534 ~ 30698973 (-)
G161871 NA non-coding downstream 335304 30690047 ~ 30695175 (-)
LOC111194811 NA non-coding upstream 11913 31080000 ~ 31081266 (-)
LOC111194813 NA non-coding upstream 19503 31087590 ~ 31088350 (-)
G161933 NA non-coding upstream 112545 31180632 ~ 31208497 (-)
LOC111194815 NA non-coding upstream 172538 31240625 ~ 31244245 (-)
G161954 NA non-coding upstream 267559 31335646 ~ 31335881 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 248771 30699170 ~ 30781708 (-)
G161711 NA other downstream 704621 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 2089092 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 2377532 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 3451561 27429941 ~ 27578918 (-)
tap1 NA other upstream 1583881 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 3029841 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 3332576 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 5070816 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 5271293 36339380 ~ 36354701 (-)

Expression


Co-expression Network