c18h15orf65


Basic Information

Item Value
gene id c18h15orf65
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36138903 ~ 36140897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220593
AACAACCGGAGCatattagcagcagcagcagcagttttcCTCCACCTGCAGAATCCTGTCTGGCTGAGATGTCCCAAAAAGAAGAGCAACAGGATGGGTCGCAGGAAACAGCTCCTGCCCCCTGTGCCAATCCAGGCAACCCAGTCTTCACCTGCACTCTGAGACCAAAGGCCACCTCAGTTTCTCCATGGGTGAAACTGCAGAGCGCACTGTACAGAACTACAGCTAGTGAGTATGGACTGAGACCCCCGAGCTTCGAGTCTTCACCATGCTCCTACCACCCTATATCCCAGGCCTTCACTCAGCACCTGGGCCAGAGCGGGATGTACCAGGACACCACTTTCAACACTAGTCTGGACAGGAGCAGGGTGCACGACTGCCCCAACTTACAAAACACCATCTGAGTGAACAATGACCTCAAGGTCTTTTTTAATCTTAGTTGCTGACGATCTTATGTGTCTGAAGTGCGTCTGCAGAAGCCGAAGGACAAGTTTACAAATGCTTTAGTAAAAttgaatgtttaatttttttttcagagtgttCTACATTGTAGCACTGATATGTGCTGTAATAACCCAGTCTGCAATAAAAACTGTTGCAACAATATGCCTTAAAACCCTACAGAGGAATGTTGTTATGTTTTATCTAACATTTATAGTAGGTGATATAATCTCTCATAACATTGAAGAAGTCATTCACAGTGTTTCGGTGTGAATTGCTGAACTTTAAAGAAAGTTACAAAGTCAAACCTTTTTATAATAGTGGTGCATGAAACCAAATGTCTGAAAAGTATGGATGAACCAAAATTATTTTGTCCGAAATCAAATGAAAGGCCAAATATCAAGCAGTTTTTCACAGATTTCA
>TU220594
AACAACCGGAGCatattagcagcagcagcagcagttttcCTCCACCTGCAGAATCCTGTCTGGCTGAGATGTCCCAAAAAGAAGAGCAACAGGATGGGTCGCAGGAAACAGCTCCTGCCCCCTGTGCCAATCCAGGCAACCCAGTCTTCACCTGCACTCTGAGACCAAAGGCCACCTCAGTTTCTCCATGGGTGAAACTGCAGAGCGCACTGTACAGAACTACAGCTAGTGAGTATGGACTGAGACCCCCGAGCTTCGAGTCTTCACCATGCTCCTACCACCCTATATCCCAGGCCTTCACTCAGCACCTGGGCCAGAGCGGGATGTACCAGGACACCACTTTCAACACTAGTCTGGACAGGAGCAGGGTGCACGACTGCCCCAACTTACAAAACACCATCTGAGTGAACAATGACCTCAAGGTCTTTTTTAATCTTAGTTGCTGACGATCTTATGTGTCTGAAGTGCGTCTGCAGAAGCCGAAGGACAAGTTTACAAATGCTTTAGTAAAAttgaatgtttaatttttttttcagagtgttCTACATTGTAGCACTGATATGTGCTGTAATAACCCAGTCTGCAATAAAAACTGTTGCAACAATATGCCTTAAAACCCT
>XM_007251866.3
CTAGGCGAGGGGGCGGGGAGAGGTAATTTCCATGGAGACAGATCAACAACCGGAGCatattagcagcagcagcagcagttttcCTCCACCTGCAGAATCCTGTCTGGCTGAGATGTCCCAAAAAGAAGAGCAACAGGATGGGTCGCAGGAAACAGCTCCTGCCCCCTGTGCCAATCCAGGCAACCCAGTCTTCACCTGCACTCTGAGACCAAAGGCCACCTCAGTTTCTCCATGGGTGAAACTGCAGAGCGCACTGTACAGAACTACAGCTAGTGAGTATGGACTGAGACCCCCGAGCTTCGAGTCTTCACCATGCTCCTACCACCCTATATCCCAGGCCTTCACTCAGCACCTGGGCCAGAGCGGGATGTACCAGGACACCACTTTCAACACTAGTCTGGACAGGAGCAGGGTGCACGACTGCCCCAACTTACAAAACACCATCTGAGTGAACAATGACCTCAAGGTCTTTTTTAATCTTAGTTGCTGACGATCTTATGTGTCTGAAGTGCGTCTGCAGAAGCCGAAGGACAAGTTTACAAATGCTTTAGTAAAAttgaatgtttaatttttttttcagagtgttCTACATTGTAGCACTGATATGTGCTGTAATAACCCAGTCTGCAATAAAAACTGTTGCAACAATATGCCTTAAAACCCTACA

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0006996 organelle organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0044782 cilium organization biological_process
GO:0070925 organelle assembly biological_process
GO:0030030 cell projection organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU220593 True 864 TUCP 0.43 2 36138903 36140853
TU220594 False 620 TUCP 0.48 2 36139147 36140853
XM_007251866.3 False 667 mRNA 0.49 2 36139144 36140897

Neighbor

gene id symbol gene type direction distance location
sdr42e1 sdr42e1 coding downstream 156835 35976180 ~ 35982068 (-)
wtip wtip,LOC107600421,LOC107594378 coding downstream 168396 35925563 ~ 35970507 (-)
kiaa0355 kiaa0355,LOC102798860 coding downstream 252288 35811994 ~ 35886615 (-)
LOC103025397 LOC108431712,LOC107668485,LOC107712581,LOC107734866,LOC107659171,LOC103379346,LOC105892636 coding downstream 361543 35617599 ~ 35777360 (-)
LOC103027073 NA coding downstream 1745455 34380613 ~ 34393448 (-)
pigb pigb coding upstream 29747 36170644 ~ 36182267 (-)
fam214a fam214a coding upstream 120018 36260915 ~ 36323083 (-)
LOC103044212 kpyk,LOC103044212,LOC108432067,LOC107712845,LOC108264538,LOC106587214,LOC107665073,LOC107595343 coding upstream 1269090 37409987 ~ 37442960 (-)
LOC103042980 LOC108432642,LOC102311314,LOC102789927,LOC106562120,LOC101080058,LOC103046663 coding upstream 1823434 37964331 ~ 37976276 (-)
LOC103023582 chst1,LOC108432931 coding upstream 2527816 38668713 ~ 38671899 (-)
G162834 NA non-coding downstream 17691 36118887 ~ 36121212 (-)
G162833 pygo1 non-coding downstream 20921 36116789 ~ 36117982 (-)
G162826 NA non-coding downstream 28523 36105401 ~ 36110380 (-)
G162814 nedd4,LOC107600906,LOC106562216 non-coding downstream 74513 36056629 ~ 36064390 (-)
G162813 nedd4,LOC107735005,LOC103371920 non-coding downstream 82550 36054388 ~ 36056353 (-)
G162881 NA non-coding upstream 87849 36228746 ~ 36229863 (-)
G162886 NA non-coding upstream 93966 36234863 ~ 36237136 (-)
G162896 NA non-coding upstream 132889 36273786 ~ 36274511 (-)
G162906 NA non-coding upstream 183593 36324490 ~ 36325797 (-)
G162905 NA non-coding upstream 190655 36331552 ~ 36332704 (-)
LOC103026784 thsd7a other downstream 1407831 34400663 ~ 34731072 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other downstream 2023501 34097928 ~ 34115402 (-)
tap1 NA other downstream 3463634 32651968 ~ 32675269 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 5357195 30699170 ~ 30781708 (-)
G161711 NA other downstream 5813045 30315606 ~ 30325858 (-)
onecut1 onecut1 other upstream 198483 36339380 ~ 36354701 (-)
G163230 NA other upstream 1737918 37878815 ~ 37879415 (-)
LOC111194721 NA other upstream 1840199 37981096 ~ 38024333 (-)
G163591 NA other upstream 3286951 39427848 ~ 39428541 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other upstream 3349885 39490782 ~ 39493278 (-)

Expression


Co-expression Network