LOC103023582 (chst1,LOC108432931)


Basic Information

Item Value
gene id LOC103023582
gene name chst1,LOC108432931
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38668713 ~ 38671899 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243005.3
agggaggaggGTGGTCCAGTCTTTCAGCagtctctcgcgctctctctctcagtctctctcgcGCGCTTCCTCCGCATCACTCCGGATTTTTCCCCTCGTCTCCTCCGCGCGCTCCCGCGGGTCCAGCCCCGAGCCTCGAGCCCCGCGCGGCGATGCGCCTCCACCCGGAGCGACACGGCGGGCAGCGGGCGGGAGTGATGGCGCGCGCGTGACGCTGTATGGATGGGCAGCGCTCTGTCAGCGGGGGGAGGCCGGGAGGATGCGCGCGGACGCGGAGaggggcagcagcagcagcagcagaggcgcGCGCGGACTGAGGCTGCAGCTCTGAAGCAAGAGCACAGCGCGAGCCCACGACCTCCACACAACCACCACcatcagtagcagcagcagctcctctAACACCACCAACCAACAGCGAGGAGATAGGATCAGCTCCAGTCCGCAGAGTCTAAATGAAGTTTCCCAGCCATGCAATGTTCCTGGAAGGCTGTGATCCTGCTAGCCTTGGCCTCCATTGCCATCCAGTACACAGCTATCCGGACCTTCACCTCCAAGCCTTTCCAGCTCTGCCCTGTGTTGATCCCGCAGAACTGCGGCCTGGGGGCGCAGGAAACCGACACGCCCTTCGAGCGGGGGTGTGACGAGTACGCTTACTTCAACGCCTTCAACGCCTCGAGAAAGACCCATGTCCTCGTGTTGGCCACCACCCGCAGCGGCTCGTCGTTCGTGGGGCAGCTGTTGAACCAGCACTTGGACATCTTTTACCTGTTTGAGCCGCTTTACCACGTCCAGACGGCTCTGATTCCTCGCCTCTCGCACAGTCGCAACACCGCTGACAGGCGAGTGATGCTGGGGGCCAGTCGGGACTTGCTCCGGAGCCTCTACGGCTGTGACCTGCACTTTCTGGAAAGCTACATCAAGCCAGCACCGACCAATCACACCACAGACAAGCTGTTTCGCCGTGGGGCCAGCAGGGCACTCTGCTCCCAGCCAGTCTGCGATGCCTTCAGCCCTGCGGAGGCCAACGTGGAAGAGGGCGACTGCGTGAAGAAGTGTGCAACGCTCAACATGACCCTCGCGGCCGAGTCCTGCCGGGATAAGCGGCACGTAGCTATAAAGATCGTGCGGGTCCCTGAAATCGGGGACCTGCGGGCTCTGGTGGAGGACCCACGTCTTAACCTAAAAGTGATTCAACTGGTTAGAGATCCTCGGGGGATTCTAGCCTCTCGGATCGAGACCTTCCGGGACACCTACCGATTGTGGAGGATCTGGAGGGCAACAGGGAGGAAACCCTACAACCTTGACTTGACTCAGCTGACGGTGGTATGTGAGGACTTCCTGAGCTCCGTTTCTACAGGCCTCAGCCACCCTTACTGGCTTAAGGGGAAATACATGGTGGTGCGATACGAGGACTTAGCAAGGAACCCACTCCAGAAAACCAAGGATATCTACGACTACCTTGGGCTATCTATGGACAAAAATGTTGTAGATTGGATCCAAGCAAACACCAGGGGGAGTAACGAGCTCTCGGCCAAACACAAATACGGAACAGTGAGAGACTCTGCAGCCAACGCCGAGAGCTGGAGGCTCAAGCTGTCCTTTGACATGGTGGACTACACACAGACTGTATGTCAAAAGATCCTACACACACTGGGCTATAAAAGCGTCAAATCTGCAGAGGAACTGAAAAATATGTCTCTCTCGCTTGTGGCAGACAAAGTTTTTGTACCGTTTTTATAACAAAGATGGTTGTGAATGACtatttttgatatatttataaatgttgcCTTATGATCGATGTTaagattattgattattgtccACCCTCTCCTCCATTTACTGTTTGAATTTGCACTAAATTCCAAAATCCTTGAATTCATGTGGATGGAGTTCCTTATTCATCTAGAAACAATAGAGCACAAGTAAATTGAACCGAGTTGCTTTAACAATTAAAGGTACAAGTGAATGTTGTCCTATATTGCGAGGGTCTTGTCGGCTCTGCAAAGAGAACGGTGATTGAAAACACATAGACCAAAATGTGGCAGAGGTAGTAACACACTGTATGAGAAACAACTGTGCAATAAATTGTGAATGTCGCAGTCCA

Function

symbol description
chst1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and keratan sulfate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; otic placode; retina; and retinal inner nuclear layer. Orthologous to human CHST1 (carbohydrate sulfotransferase 1).

NR:

description
PREDICTED: carbohydrate sulfotransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243005.3 True 2107 mRNA 0.55 2 38668713 38671899

Neighbor

gene id symbol gene type direction distance location
LOC103042980 LOC108432642,LOC102311314,LOC102789927,LOC106562120,LOC101080058,LOC103046663 coding downstream 692437 37964331 ~ 37976276 (-)
LOC103044212 kpyk,LOC103044212,LOC108432067,LOC107712845,LOC108264538,LOC106587214,LOC107665073,LOC107595343 coding downstream 1225753 37409987 ~ 37442960 (-)
fam214a fam214a coding downstream 2345630 36260915 ~ 36323083 (-)
pigb pigb coding downstream 2486446 36170644 ~ 36182267 (-)
sdr42e1 sdr42e1 coding downstream 2686645 35976180 ~ 35982068 (-)
LOC111194821 LOC108411626 coding upstream 153424 38825323 ~ 38835978 (-)
LOC103036953 NA coding upstream 478144 39150043 ~ 39171591 (-)
pstpip1 LOC108435346 coding upstream 520412 39192311 ~ 39234568 (-)
rcn2 rcn2,LOC107690352,LOC107725741,LOC107567882 coding upstream 580022 39251921 ~ 39264714 (-)
LOC107197485 NA coding upstream 672839 39344738 ~ 39387914 (-)
G163303 NA non-coding downstream 13418 38607433 ~ 38655295 (-)
G163266 NA non-coding downstream 74562 38593877 ~ 38594151 (-)
G163240 NA non-coding downstream 704986 37963515 ~ 37963727 (-)
G163235 NA non-coding downstream 742414 37925731 ~ 37926299 (-)
G163231 NA non-coding downstream 761604 37906862 ~ 37907109 (-)
G163329 NA non-coding upstream 20772 38692671 ~ 38768472 (-)
G163357 NA non-coding upstream 123060 38794959 ~ 38795212 (-)
G163358 NA non-coding upstream 125259 38797158 ~ 38797505 (-)
G163363 NA non-coding upstream 138435 38810334 ~ 38810555 (-)
G163366 NA non-coding upstream 143370 38815269 ~ 38815551 (-)
LOC111194721 NA other downstream 644380 37981096 ~ 38024333 (-)
G163230 NA other downstream 789298 37878815 ~ 37879415 (-)
onecut1 onecut1 other downstream 2314012 36339380 ~ 36354701 (-)
c18h15orf65 NA other downstream 2527816 36138903 ~ 36140897 (-)
LOC103026784 thsd7a other downstream 3937641 34400663 ~ 34731072 (-)
G163591 NA other upstream 755949 39427848 ~ 39428541 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other upstream 818883 39490782 ~ 39493278 (-)
LOC111194826 NA other upstream 1152764 39824663 ~ 39828074 (-)
G163831 NA other upstream 1770462 40442361 ~ 40446071 (-)
LOC103037145 LOC108437874,LOC108260277,LOC107083184,LOC104918338,LOC103373486,LOC100698953 other upstream 2101111 40773010 ~ 40798006 (-)

Expression


Co-expression Network