LOC111194826


Basic Information

Item Value
gene id LOC111194826
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39824663 ~ 39828074 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221732
AGGGCTGGTATAAGCAGGCGGCGGGTCCGAGCTATTACTCGGTGGGCAGAGCGTCCGGGCTGCTGTCCGGGATCCGGCGCTCCCCTTACCGGAGAGCGGAACCGGCGGAACCGGACCCGCGGGAGACCACCGGACCGGCCTCTGACTACGACCTGCTCTCTGACCCGCACCCGAACTCTGTCCTGCAGAACCTGaacgTGTGTGTGAAAAGCATGAGCCCCGACCTGAAGAGCTGTCGACTGGTCCAGGACCCCCGGGCCACGTTCCGCTGCGAGGCGACCGTACTGATCTCACTGGACTCCAGAGACTGTCTGAACCTCTGAACATCAGCAGCAGAAGATTCACCCAGAGATAATGATGATCCTACCTCTCTCAGCATGGAAACACAGCCCTCACAGACTGTccttttattgattattgatttttttgatCTCGGTTTTGATGTTAAACACTGGAAGACTCTGCTAGTAcaatagtttggacacaccttctcttttttagtgcgttttctttattttttattttcatgactttttacattgtagattctcactgaagcatcaaaactatgaatgaacacatgtggagttttatgtacttaataaaaaa
>TU221733
AGGGCTGGTATAAGCAGGCGGCGGGTCCGAGCTATTACTCGGTGGGCAGAGCGTCCGGGCTGCTGTCCGGGATCCGGCGCTCCCCTTACCGGAGAGCGGAACCGGCGGAACCGGACCCGCGGGAGACCACCGGACCGGCCTCTGACTACGACCTGCTCTCTGACCCGCACCCGAACTCTGTCCTGCAGAACCTGaacgTGTGTGTGAAAAGCATGAGCCCCGACCTGAAGAGCTGTCGACTGGTCCAGGACCCCCGGGCCACGTTCCGCTGCGAGGCGACCGTACTGATCTCACTGGACTCCAGAGACTGTCTGAACCTCTGAACATCAGCAGCAGAAGATTCACCCAGAGATAATGATGATCCTACCTCTCTCAGCATGGAAACACAGCCCTCACAGACTGTccttttattgattattgatttttttgatCTCGGTTTTGATGTTAAACACTGGAAGACTCTGCTAGTAcaatagtttggacacaccttctcttttttagtgcgttttctttattttttattttcatgactttttacattgtagattctcactgaagc
>XM_022679950.1
GAGGAGATGAGGACTGGGCTCCTCTATATAAAGCGCAGTCAGGTGGAGGAGAGGATCAGGAACTTCAGGCTACAGCGGGTCTCCAGAAGCTCCAGTATGCTGCAGAGCGGGTCCgcggttctggttctggtgctGGTCTCGGCGCTCGGGCCGGTGGAGGGCTGGTATAAGCAGGCGGCGGGTCCGAGCTATTACTCGGTGGGCAGAGCGTCCGGGCTGCTGTCCGGGATCCGGCGCTCCCCTTACCGGAGAGCGGAACCGGCGGAACCGGACCCGCGGGAGACCACCGGACCGGCCTCTGACTACGACCTGCTCTCTGACCCGCACCCGAACTCTGTCCTGCAGAACCTGaacgTGTGTGTGAAAAGCATGAGCCCCGACCTGAAGAGCTGTCGACTGGTCCAGGACCCCCGGGCCACGTTCCGCTGCGAGGCGACCGTACTGATCTCACTGGACTCCAGAGACTGTCTGAACCTCTGAACATCAGCAGCAGAAGATTCACCCAGAGATAATGATGATCCTACCTCTCTCAGCATGGAAACACAGCCCTCACAGACTGTccttttattgattattgatttttttgatCTCGGTTTTGATGTTAAACACTGGAAGACTCTGCTAGTAcaatagtttggacacaccttctcttttttagtgcgttttctttattttttattttcatgactttttacattgtagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221732 False 609 lncRNA 0.50 2 39824663 39827917
TU221733 False 559 lncRNA 0.53 2 39824713 39827917
XM_022679950.1 True 704 mRNA 0.55 2 39824725 39828074

Neighbor

gene id symbol gene type direction distance location
LOC111194725 NA coding downstream 16861 39803391 ~ 39807802 (-)
LOC103047779 kcnj5,LOC107558569,LOC107725067,LOC107709561 coding downstream 350717 39461368 ~ 39473946 (-)
LOC103027792 st7,LOC108443055,LOC106573121 coding downstream 399194 39392378 ~ 39425469 (-)
LOC107197485 NA coding downstream 436749 39344738 ~ 39387914 (-)
rcn2 rcn2,LOC107690352,LOC107725741,LOC107567882 coding downstream 559949 39251921 ~ 39264714 (-)
LOC103040487 rasd1,LOC103040487,LOC108437878,LOC108274801,LOC108241306,LOC106942351,LOC103468867,LOC104918344 coding upstream 1043043 40871117 ~ 40872921 (-)
sox8 sox8 coding upstream 1192869 41020943 ~ 41026913 (-)
adap1 adap1,LOC108276756,LOC106601846,LOC106606469 coding upstream 1500050 41328124 ~ 41370373 (-)
G163705 NA non-coding downstream 3266 39814991 ~ 39821397 (-)
G163697 NA non-coding downstream 27911 39796545 ~ 39796752 (-)
G163687 NA non-coding downstream 36220 39785140 ~ 39788443 (-)
G163652 reln non-coding downstream 117337 39706630 ~ 39707326 (-)
G163634 NA non-coding downstream 263555 39554051 ~ 39561108 (-)
G163753 NA non-coding upstream 117636 39945710 ~ 39946515 (-)
G163755 NA non-coding upstream 121552 39949626 ~ 40009018 (-)
G163757 NA non-coding upstream 152318 39980392 ~ 39982726 (-)
G163760 NA non-coding upstream 184914 40012988 ~ 40013384 (-)
G163764 NA non-coding upstream 190839 40018913 ~ 40019903 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other downstream 331385 39490782 ~ 39493278 (-)
G163591 NA other downstream 396122 39427848 ~ 39428541 (-)
LOC111194721 NA other downstream 1800330 37981096 ~ 38024333 (-)
G163230 NA other downstream 1945248 37878815 ~ 37879415 (-)
onecut1 onecut1 other downstream 3469962 36339380 ~ 36354701 (-)
G163831 NA other upstream 614287 40442361 ~ 40446071 (-)
LOC103037145 LOC108437874,LOC108260277,LOC107083184,LOC104918338,LOC103373486,LOC100698953 other upstream 944936 40773010 ~ 40798006 (-)
G163970 NA other upstream 1180723 41008797 ~ 41009183 (-)

Expression


Co-expression Network