G163687


Basic Information

Item Value
gene id G163687
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39785140 ~ 39788443 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221680
TCGAGTTTTGAACAgttctttattttgctttgtcTTCAGCTTTGGTGGTTGGgtaagagtgtgtatgtgtgtgtgtgtacagtatgtctgtgtgttgtgtgtgtgcgtgtgtgtgtgtatttgtacacACACTAGTGACTGATATATTCTAGTTACACAGAGGGTGGAGGAgaggatatatttatatatatatataacacagaattacaaaaacaaacactgacGGGGAATCCCTCGCCGGGCTTCAGGTGTGAAACCGAGAggaggggggggagggggagtgGACATCACGAGAGGATGAGGTTGACAGTAGAGTTTTCATTCTGCAATCTGAGATCCTGACCCAACTGCCTAATAATTTAACACTAGAAAATAGCATACAGATTTCACACACAGTGCATTTTAAATGGGTTACATGAAGAACCATTTACCATAAAATTCTCTGGGGATCAACatataaaaatgactttaaaaagggaacaaatattaaacttttttgatgctattttatattttccattttttatttccattgctgaAGACTATATTCATCATTTCATCTCCACAAATGAAAATGATCAAACCTCAAAATATCAGAATTAGTATAcaccaatgactgtagaaaagcaCAGACAGCAGCAGACAGTAGCTCCGCCCATCCCCATACGATTCAGTGAAAACCTAAACTTTCTGCAGAGCTTATGCTGgcacatttttcttttctattattatttacttaagaTTACTGATCATGTTGTGTCATATTGTGCTGTGTACTCATTTTCCTGATTCTCCTCTAATTATTATCTACAAGCAGCTCAGGGGTTAAACTGGATCATAGTAGCTTCGGGTAATCTCACCAGTAAACTGAGCTAAAATGTTAATTGtttgttaataaaaaacacaaaccaccCCTTTATTTGTTGTTCACTTACTGAACAAACTCTGCATCCAGTAGAAATACGCTTTGTTCTacactccaaaccatcactcattggtggaaacttcacactagaccttgagcagtttggactgtctccagactctgatctcttgatttataaatgaaatgtaaaatgtactgatgatcagtgatggtttggagagtcatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagtttagttttcccacaaaatcttacagcacttcatatcttacagcttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221680 True 1215 lncRNA 0.38 2 39785140 39788443

Neighbor

gene id symbol gene type direction distance location
LOC103047779 kcnj5,LOC107558569,LOC107725067,LOC107709561 coding downstream 311194 39461368 ~ 39473946 (-)
LOC103027792 st7,LOC108443055,LOC106573121 coding downstream 359671 39392378 ~ 39425469 (-)
LOC107197485 NA coding downstream 397226 39344738 ~ 39387914 (-)
rcn2 rcn2,LOC107690352,LOC107725741,LOC107567882 coding downstream 520426 39251921 ~ 39264714 (-)
pstpip1 LOC108435346 coding downstream 550572 39192311 ~ 39234568 (-)
LOC111194725 NA coding upstream 14948 39803391 ~ 39807802 (-)
LOC111194825 NA coding upstream 39629 39828072 ~ 39838204 (-)
LOC103040487 rasd1,LOC103040487,LOC108437878,LOC108274801,LOC108241306,LOC106942351,LOC103468867,LOC104918344 coding upstream 1082674 40871117 ~ 40872921 (-)
sox8 sox8 coding upstream 1232500 41020943 ~ 41026913 (-)
adap1 adap1,LOC108276756,LOC106601846,LOC106606469 coding upstream 1539681 41328124 ~ 41370373 (-)
G163652 reln non-coding downstream 77814 39706630 ~ 39707326 (-)
G163634 NA non-coding downstream 224032 39554051 ~ 39561108 (-)
G163594 NA non-coding downstream 328196 39456738 ~ 39456944 (-)
G163557 NA non-coding downstream 455181 39324359 ~ 39329959 (-)
G163525 NA non-coding downstream 578322 39206112 ~ 39206818 (-)
G163697 NA non-coding upstream 8102 39796545 ~ 39796752 (-)
G163705 NA non-coding upstream 26548 39814991 ~ 39821397 (-)
G163753 NA non-coding upstream 157267 39945710 ~ 39946515 (-)
G163755 NA non-coding upstream 161183 39949626 ~ 40009018 (-)
G163757 NA non-coding upstream 191949 39980392 ~ 39982726 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other downstream 291862 39490782 ~ 39493278 (-)
G163591 NA other downstream 356599 39427848 ~ 39428541 (-)
LOC111194721 NA other downstream 1760807 37981096 ~ 38024333 (-)
G163230 NA other downstream 1905725 37878815 ~ 37879415 (-)
onecut1 onecut1 other downstream 3430439 36339380 ~ 36354701 (-)
LOC111194826 NA other upstream 36220 39824663 ~ 39828074 (-)
G163831 NA other upstream 653918 40442361 ~ 40446071 (-)
LOC103037145 LOC108437874,LOC108260277,LOC107083184,LOC104918338,LOC103373486,LOC100698953 other upstream 984567 40773010 ~ 40798006 (-)
G163970 NA other upstream 1220354 41008797 ~ 41009183 (-)

Expression


Co-expression Network