LOC103027792 (st7,LOC108443055,LOC106573121)


Basic Information

Item Value
gene id LOC103027792
gene name st7,LOC108443055,LOC106573121
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39392378 ~ 39425469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679942.1
AATGAGAGCGGGGCTGGGTGATTGAGGAATAGTAAGTCATGCAGGCTGCTGGTGTATTTTCTCTGGTAaagtttggttgtgttttgcGCGCTTTTCCGGAAGAGTCCTGCAGGTTTCCGGTAGATACAGCGGATAAACGGAGTTTAAGGCTTAACCCGACCAATCGCAGACGCCCTGCTTCAGCTGCAGCAGCTTCATCTGCTGTGTCTGAGgcgagagggagagggagaagagCTGAAGAGTGGAGGGAGTAAGAGTGATTGGAGTGAGCTGGTGTACCGCGGTGTTTGGCTGGGTCTGAGCGTGGTGGCGGCTGGGGGTCCGGCGTGTGCTTTGTGGACGTCCTGCGGCCGCTGGGTCTCTCCATGGCAGCGTGAGGCTGAGGCGCTGCTGAGGACGAGCGAGCAGGAGGCTGCCGGCTGCAGGAGAGCGGCGGTTGGCCTGCGCTGTGCAGGCCGGCTGCATTGTGTGCATTGATGACCCCTGCTGAGTAGCTGCCTGTTCAtcctcctcccctcccctctttctctctctctctctctctctctccccctccctttctctctctctttctccatcgcAGCACCCAGCCCAGCCATGTTTGGCACAGAATCCTCGCTAAGCATGTTCCTGAATACTTTAACTCCCAAATTTTACGTGGCTTTAACTGGCACTTCATCGTTGATTTCAGGACTTATATTGATATTTGAGTGGTGGTACTTCAGGAAGTACGGAACTTCATTCATCGAGCAGGTGTCTGTGAGTCACCTGCGCCCTCTGCTGGGAGGAATAGATAACAGCACTCCAAACAACTTAAACACAAGTAACGGAGATGCAGACTCGAGTCGACAGAGTGTATCAGaATGTAAGGTATGGAGAAATCCTCTAAATCTATTTAGAGGAGCAGAATATAACCGATACACGTGGGTTACCGGTAGAGAGCCTCTCACATACTATGACATGAATCTTTCAGCACAGGACCATCAGACCTTCTTCACCTGCGATTCAGACCACATCCGCTCTGCTGATGCTATAATGCAGAAGGCATGGAGAGAGAGGAACCCACAGGCACGGATCTCTGCAGCTCATGAAGCTCTAGAGCAGGAGGACCCGGCCACAGCGTATATCCTGTTAGCTGAAGAGGAGGCGACCACCATCGTGGAGGCAGAGAAGCTCTTTAAACAGGCTCTGAAAGTGGGGGAAGGCTGCTACCGCCGCAGCCAGCAGTTTCAGCACCACGGCTCTCAGTACGAAGCTCAGCACAGAAGGGATACAAATGTATTGGTGTACATTAAGAGGAGGCTAGCTATGTGCTCCAGAAAACTTGGAAGAACAAGAGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCTCTCCTCAGTATGTTCAATATTCACGAGAACCTACTGGAGTCCCTCTTAGAGCTTCAGAACTACGCTGATGTACAAGCAGTACTTGCCAAATATGATGACATTAGCTTACCAAAATCTGCAACGATATGCTACACAGCTGCCCTTCTTAAAGCCAGAGCAGTATCAGACAAATTTTCTCCAGAGGCAGCGTCTCGGCGAGGCTTGAGTACTGCAGAGATGAATGCAGTGGAAGCCATTCACAGAGCAGTCGAATTCAACCCACATGTGCCCAAATACCTCTTAGAGATGAAAAGTTTGATACTGCCTCCAGAGCACATCCTGAAGCGAGGAGACAGCGAGGCCATAGCGTACGCCTTCTTCCACCTGCAGCACTGGAAGAGAGTGGAGGGAGCGCTCAACCTGCTGCACTGCACGTGGGAGGGCACTTTTAGAATGATTCCTTACCCTTTAGAAAAAGGGCATCTGTTTTATCCGTACCCCATCTGCACAGAGACCGCCGACAGAGAACTTCTACCAACAGTGTTTCATGAAGTTTCTGTGTACCCGAAGAAGGAGCTGCCTTTCTTCATTCTGTTTACAGCAGGCCTCTGCTCCTTCACCGCGATGCTCGCTCTCCTCACACACCAGTTCCCTGAGCTCATGGGAGTCTTCGCTAAGGCATTTCTTGGGACTCTGTTTGCTCCTCTAAACTTCATCATGGAGAAAGTGGAAAGTATTCTACCGTCTGGACTCTGGCACCAGCTGACGCGCATCTGACAGGACGTGAATTAAACACCCCAGTGCCAACCTCGTGGAACCTGCTGCAGCGCCAGGAGAGCAGGAGAAATGAGAGAGACACAGGAAAACGGAAAAGGAGGACTGAGATTTTCATTCTATtgtctttttccatttttcttgatgatgtaaaaaaatgtttttttcagagaGGCTGAAGATAGcctgattaaagtaaaaaaagagcaACA
>XM_022679943.1
AATGAGAGCGGGGCTGGGTGATTGAGGAATAGTAAGTCATGCAGGCTGCTGGTGTATTTTCTCTGGTAaagtttggttgtgttttgcGCGCTTTTCCGGAAGAGTCCTGCAGGTTTCCGGTAGATACAGCGGATAAACGGAGTTTAAGCAGGCTTAACCCGACCAATCGCAGACGCCCTGCTTCAGCTGCAGCAGCTTCATCTGCTGTGTCTGAGgcgagagggagagggagaagagCTGAAGAGTGGAGGGAGTAAGAGTGATTGGAGTGAGCTGGTGTACCGCGGTGTTTGGCTGGGTCTGAGCGTGGTGGCGGCTGGGGGTCCGGCGTGTGCTTTGTGGACGTCCTGCGGCCGCTGGGTCTCTCCATGGCAGCGTGAGGCTGAGGCGCTGCTGAGGACGAGCGAGCAGGAGGCTGCCGGCTGCAGGAGAGCGGCGGTTGGCCTGCGCTGTGCAGGCCGGCTGCATTGTGTGCATTGATGACCCCTGCTGAGTAGCTGCCTGTTCAtcctcctcccctcccctctttctctctctctctctctctctctccccctccctttctctctctctttctccatcgcAGCACCCAGCCCAGCCATGTTTGGCACAGAATCCTCGCTAAGCATGTTCCTGAATACTTTAACTCCCAAATTTTACGTGGCTTTAACTGGCACTTCATCGTTGATTTCAGGACTTATATTGATATTTGAGTGGTGGTACTTCAGGAAGTACGGAACTTCATTCATCGAGCAGGTGTCTGTGAGTCACCTGCGCCCTCTGCTGGGAGGAATAGATAACAGCACTCCAAACAACTTAAACACAAGTAACGGAGATGCAGACTCGAGTCGACAGAGTGTATCAGaATGTAAGGTATGGAGAAATCCTCTAAATCTATTTAGAGGAGCAGAATATAACCGATACACGTGGGTTACCGGTAGAGAGCCTCTCACATACTATGACATGAATCTTTCAGCACAGGACCATCAGACCTTCTTCACCTGCGATTCAGACCACATCCGCTCTGCTGATGCTATAATGCAGAAGGCATGGAGAGAGAGGAACCCACAGGCACGGATCTCTGCAGCTCATGAAGCTCTAGAGCAGGAGGACCCGGCCACAGCGTATATCCTGTTAGCTGAAGAGGAGGCGACCACCATCGTGGAGGCAGAGAAGCTCTTTAAACAGGCTCTGAAAGTGGGGGAAGGCTGCTACCGCCGCAGCCAGCAGTTTCAGCACCACGGCTCTCAGTACGAAGCTCAGCACAGAAGGGATACAAATGTATTGGTGTACATTAAGAGGAGGCTAGCTATGTGCTCCAGAAAACTTGGAAGAACAAGAGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCTCTCCTCAGTATGTTCAATATTCACGAGAACCTACTGGAGTCCCTCTTAGAGCTTCAGAACTACGCTGATGTACAAGCAGTACTTGCCAAATATGATGACATTAGCTTACCAAAATCTGCAACGATATGCTACACAGCTGCCCTTCTTAAAGCCAGAGCAGTATCAGACAAATTTTCTCCAGAGGCAGCGTCTCGGCGAGGCTTGAGTACTGCAGAGATGAATGCAGTGGAAGCCATTCACAGAGCAGTCGAATTCAACCCACATGTGCCCAAATACCTCTTAGAGATGAAAAGTTTGATACTGCCTCCAGAGCACATCCTGAAGCGAGGAGACAGCGAGGCCATAGCGTACGCCTTCTTCCACCTGCAGCACTGGAAGAGAGTGGAGGGAGCGCTCAACCTGCTGCACTGCACGTGGGAGGGCACTTTTAGAATGATTCCTTACCCTTTAGAAAAAGGGCATCTGTTTTATCCGTACCCCATCTGCACAGAGACCGCCGACAGAGAACTTCTACCAACAGTGTTTCATGAAGTTTCTGTGTACCCGAAGAAGGAGCTGCCTTTCTTCATTCTGTTTACAGCAGGCCTCTGCTCCTTCACCGCGATGCTCGCTCTCCTCACACACCAGTTCCCTGAGCTCATGGGAGTCTTCGCTAAGGCATTTCTTGGGACTCTGTTTGCTCCTCTAAACTTCATCATGGAGAAAGTGGAAAGTATTCTACCGTCTGGACTCTGGCACCAGCTGACGCGCATCTGACAGGACGTGAATTAAACACCCCAGTGCCAACCTCGTGGAACCTGCTGCAGCGCCAGGAGAGCAGGAGAAATGAGAGAGACACAGGAAAACGGAAAAGGAGGACTGAGATTTTCATTCTATtgtctttttccatttttcttgatgatgtaaaaaaatgtttttttcagagaGGCTGAAGATAGcctgattaaagtaaaaaaagagcaACA
>XM_022679944.1
AATGAGAGCGGGGCTGGGTGATTGAGGAATAGTAAGTCATGCAGGCTGCTGGTGTATTTTCTCTGGTAaagtttggttgtgttttgcGCGCTTTTCCGGAAGAGTCCTGCAGGTTTCCGGTAGATACAGCGGATAAACGGAGTTTAAGGCTTAACCCGACCAATCGCAGACGCCCTGCTTCAGCTGCAGCAGCTTCATCTGCTGTGTCTGAGgcgagagggagagggagaagagCTGAAGAGTGGAGGGAGTAAGAGTGATTGGAGTGAGCTGGTGTACCGCGGTGTTTGGCTGGGTCTGAGCGTGGTGGCGGCTGGGGGTCCGGCGTGTGCTTTGTGGACGTCCTGCGGCCGCTGGGTCTCTCCATGGCAGCGTGAGGCTGAGGCGCTGCTGAGGACGAGCGAGCAGGAGGCTGCCGGCTGCAGGAGAGCGGCGGTTGGCCTGCGCTGTGCAGGCCGGCTGCATTGTGTGCATTGATGACCCCTGCTGAGTAGCTGCCTGTTCAtcctcctcccctcccctctttctctctctctctctctctctctccccctccctttctctctctctttctccatcgcAGCACCCAGCCCAGCCATGTTTGGCACAGAATCCTCGCTAAGCATGTTCCTGAATACTTTAACTCCCAAATTTTACGTGGCTTTAACTGGCACTTCATCGTTGATTTCAGGACTTATATTGATATTTGAGTGGTGGTACTTCAGGAAGTACGGAACTTCATTCATCGAGCAGGTGTCTGTGAGTCACCTGCGCCCTCTGCTGGGAGGAATAGATAACAGCACTCCAAACAACTTAAACACAAGTAACGGAGATGCAGACTCGAGTCGACAGAGTGTATCAGaATGTAAGGTATGGAGAAATCCTCTAAATCTATTTAGAGGAGCAGAATATAACCGATACACGTGGGTTACCGGTAGAGAGCCTCTCACATACTATGACATGAATCTTTCAGCACAGGACCATCAGACCTTCTTCACCTGCGATTCAGACCACATCCGCTCTGCTGATGCTATAATGCAGAAGGCATGGAGAGAGAGGAACCCACAGGCACGGATCTCTGCAGCTCATGAAGCTCTAGAGCAGGAGGACCCGGCCACAGCGTATATCCTGTTAGCTGAAGAGGAGGCGACCACCATCGTGGAGGCAGAGAAGCTCTTTAAACAGGCTCTGAAAGTGGGGGAAGGCTGCTACCGCCGCAGCCAGCAGTTTCAGCACCACGGCTCTCAGTACGAAGCTCAGCACAGAAGGGATACAAATGTATTGGTGTACATTAAGAGGAGGCTAGCTATGTGCTCCAGAAAACTTGGAAGAACAAGAGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCTCTCCTCAGTATGTTCAATATTCACGAGAACCTACTGGAGTCCCTCTTAGAGCTTCAGAACTACGCTGATGTACAAGCAGTACTTGCCAAATATGATGACATTAGCTTACCAAAATCTGCAACGATATGCTACACAGCTGCCCTTCTTAAAGCCAGAGCAGTATCAGACAAATTTTCTCCAGAGGCAGCGTCTCGGCGAGGCTTGAGTACTGCAGAGATGAATGCAGTGGAAGCCATTCACAGAGCAGTCGAATTCAACCCACATGTGCCCAAATACCTCTTAGAGATGAAAAGTTTGATACTGCCTCCAGAGCACATCCTGAAGCGAGGAGACAGCGAGGCCATAGCGTACGCCTTCTTCCACCTGCAGCACTGGAAGAGAGTGGAGGGAGCGCTCAACCTGCTGCACTGCACGTGGGAGGGCACTTTTAGAATGATTCCTTACCCTTTAGAAAAAGGGCATCTGTTTTATCCGTACCCCATCTGCACAGAGACCGCCGACAGAGAACTTCTACCAATGTTTCATGAAGTTTCTGTGTACCCGAAGAAGGAGCTGCCTTTCTTCATTCTGTTTACAGCAGGCCTCTGCTCCTTCACCGCGATGCTCGCTCTCCTCACACACCAGTTCCCTGAGCTCATGGGAGTCTTCGCTAAGGCATTTCTTGGGACTCTGTTTGCTCCTCTAAACTTCATCATGGAGAAAGTGGAAAGTATTCTACCGTCTGGACTCTGGCACCAGCTGACGCGCATCTGACAGGACGTGAATTAAACACCCCAGTGCCAACCTCGTGGAACCTGCTGCAGCGCCAGGAGAGCAGGAGAAATGAGAGAGACACAGGAAAACGGAAAAGGAGGACTGAGATTTTCATTCTATtgtctttttccatttttcttgatgatgtaaaaaaatgtttttttcagagaGGCTGAAGATAGcctgattaaagtaaaaaaagagcaACA

Function

symbol description
st7 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and liver. Orthologous to human ST7 (suppression of tumorigenicity 7).

NR:

description
PREDICTED: suppressor of tumorigenicity 7 protein homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679942.1 False 2345 mRNA 0.50 16 39392378 39425469
XM_022679943.1 True 2348 mRNA 0.50 16 39392378 39425469
XM_022679944.1 False 2342 mRNA 0.50 16 39392378 39425469

Neighbor

gene id symbol gene type direction distance location
LOC107197485 NA coding downstream 4464 39344738 ~ 39387914 (-)
rcn2 rcn2,LOC107690352,LOC107725741,LOC107567882 coding downstream 127664 39251921 ~ 39264714 (-)
pstpip1 LOC108435346 coding downstream 157810 39192311 ~ 39234568 (-)
LOC103036953 NA coding downstream 220787 39150043 ~ 39171591 (-)
LOC111194821 LOC108411626 coding downstream 556400 38825323 ~ 38835978 (-)
LOC103047779 kcnj5,LOC107558569,LOC107725067,LOC107709561 coding upstream 35899 39461368 ~ 39473946 (-)
LOC111194725 NA coding upstream 377922 39803391 ~ 39807802 (-)
LOC111194825 NA coding upstream 402603 39828072 ~ 39838204 (-)
LOC103040487 rasd1,LOC103040487,LOC108437878,LOC108274801,LOC108241306,LOC106942351,LOC103468867,LOC104918344 coding upstream 1445648 40871117 ~ 40872921 (-)
sox8 sox8 coding upstream 1595474 41020943 ~ 41026913 (-)
G163557 NA non-coding downstream 62419 39324359 ~ 39329959 (-)
G163525 NA non-coding downstream 185560 39206112 ~ 39206818 (-)
G163512 NA non-coding downstream 200975 39189813 ~ 39191403 (-)
G163515 NA non-coding downstream 242529 39148961 ~ 39149849 (-)
LOC111194823 NA non-coding downstream 248276 39139884 ~ 39144102 (-)
G163594 NA non-coding upstream 31269 39456738 ~ 39456944 (-)
G163634 NA non-coding upstream 128582 39554051 ~ 39561108 (-)
G163652 reln non-coding upstream 281161 39706630 ~ 39707326 (-)
G163687 NA non-coding upstream 359671 39785140 ~ 39788443 (-)
G163697 NA non-coding upstream 371076 39796545 ~ 39796752 (-)
LOC111194721 NA other downstream 1368045 37981096 ~ 38024333 (-)
G163230 NA other downstream 1512963 37878815 ~ 37879415 (-)
onecut1 onecut1 other downstream 3037677 36339380 ~ 36354701 (-)
c18h15orf65 NA other downstream 3251481 36138903 ~ 36140897 (-)
LOC103026784 thsd7a other downstream 4661306 34400663 ~ 34731072 (-)
G163591 NA other upstream 2379 39427848 ~ 39428541 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other upstream 65313 39490782 ~ 39493278 (-)
LOC111194826 NA other upstream 399194 39824663 ~ 39828074 (-)
G163831 NA other upstream 1016892 40442361 ~ 40446071 (-)
LOC103037145 LOC108437874,LOC108260277,LOC107083184,LOC104918338,LOC103373486,LOC100698953 other upstream 1347541 40773010 ~ 40798006 (-)

Expression


Co-expression Network