G162896


Basic Information

Item Value
gene id G162896
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36273786 ~ 36274511 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220660
agaattacagttttgtttgcctAGTTTAGCTGTAATTAACCCACCCAGCAgcaaaacctgctgaattagaagggaaacattgtgacacccctgttcctttctattgtcatttagaatgtaccttataatccagtgcaccttatgtattaaCCTTAAACCATAAAATATCGTATTACTACTTTGTATGTGTTACTTTTCctcattcttttaaaatattaagggATGCCAGACTGAGAGGAATTTTTTAGGGTACACCTTTATTGTGTTGGCTACGCATGCATGGAGAAGATACCTAGATTTAATATACCTACATACCATGTGTACCTATATTATAAATGTTGTGCAGTTATTCTTTTAGTTATTTTGATGATTAATTGAGgcgacttttttttatatataatttaaaagcaTATCTTCGCGCTTACAGAAAAACCTTGTTTAttgatttttgctgtttttgagtTTTTCCACATAATATGACTCCCATTTTTGAGTAGGAATGCCCCCACTGTCACTGACGCAGAATCACTGAACAGCGCCCCAGCTCTGATGCTAACAGATGACTGTGCCGACTGATATCACCTTCCGAATGATGTGGGGAGATagtgtcatctacccacccagatgCAATGCCAATTatcctctctctgactccggctgctgatggcaagctgcatgatcagaGATTCGAACTAGGCGATCTTGAGTTTATAGTGTACATAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220660 True 726 lncRNA 0.38 1 36273786 36274511

Neighbor

gene id symbol gene type direction distance location
pigb pigb coding downstream 91519 36170644 ~ 36182267 (-)
sdr42e1 sdr42e1 coding downstream 291718 35976180 ~ 35982068 (-)
wtip wtip,LOC107600421,LOC107594378 coding downstream 303279 35925563 ~ 35970507 (-)
kiaa0355 kiaa0355,LOC102798860 coding downstream 387171 35811994 ~ 35886615 (-)
LOC103025397 LOC108431712,LOC107668485,LOC107712581,LOC107734866,LOC107659171,LOC103379346,LOC105892636 coding downstream 496426 35617599 ~ 35777360 (-)
LOC103044212 kpyk,LOC103044212,LOC108432067,LOC107712845,LOC108264538,LOC106587214,LOC107665073,LOC107595343 coding upstream 1135476 37409987 ~ 37442960 (-)
LOC103042980 LOC108432642,LOC102311314,LOC102789927,LOC106562120,LOC101080058,LOC103046663 coding upstream 1689820 37964331 ~ 37976276 (-)
LOC103023582 chst1,LOC108432931 coding upstream 2394202 38668713 ~ 38671899 (-)
LOC111194821 LOC108411626 coding upstream 2550812 38825323 ~ 38835978 (-)
LOC103036953 NA coding upstream 2875532 39150043 ~ 39171591 (-)
G162886 NA non-coding downstream 36650 36234863 ~ 36237136 (-)
G162881 NA non-coding downstream 43923 36228746 ~ 36229863 (-)
G162834 NA non-coding downstream 152574 36118887 ~ 36121212 (-)
G162833 pygo1 non-coding downstream 155804 36116789 ~ 36117982 (-)
G162826 NA non-coding downstream 163406 36105401 ~ 36110380 (-)
G162906 NA non-coding upstream 49979 36324490 ~ 36325797 (-)
G162905 NA non-coding upstream 57041 36331552 ~ 36332704 (-)
G162913 NA non-coding upstream 113698 36388209 ~ 36388594 (-)
G162924 NA non-coding upstream 224532 36499043 ~ 36499666 (-)
G162928 NA non-coding upstream 269942 36544453 ~ 36544769 (-)
c18h15orf65 NA other downstream 132889 36138903 ~ 36140897 (-)
LOC103026784 thsd7a other downstream 1542714 34400663 ~ 34731072 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other downstream 2158384 34097928 ~ 34115402 (-)
tap1 NA other downstream 3598517 32651968 ~ 32675269 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 5492078 30699170 ~ 30781708 (-)
onecut1 onecut1 other upstream 64869 36339380 ~ 36354701 (-)
G163230 NA other upstream 1604304 37878815 ~ 37879415 (-)
LOC111194721 NA other upstream 1706585 37981096 ~ 38024333 (-)
G163591 NA other upstream 3153337 39427848 ~ 39428541 (-)
G163627 LOC108443054,LOC108263931,LOC108265089 other upstream 3216271 39490782 ~ 39493278 (-)

Expression


Co-expression Network