LOC111194805


Basic Information

Item Value
gene id LOC111194805
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29621059 ~ 29625291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218891
TTACTCTGTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGCTGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattttaaaaaatctatattttcaaTCTCTAGTTTAGAGAGTTCTctagtagagctgggcgattaattgATTTTATCGATAAATTCGAATTTATAGTTAAGgacaatgtgtttttatgaaaatcgattttctgaGTTTTCTT
>TU218892
TTACTCTGTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGAGTAATTTAGTTAGCTGACTGTTTCAGCTCTCGGTGAAGCGCGGTCTTATTATGATACTTAAACGgcgctgggtgtttgttttgtttctgaacgagcagGTGCTGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattttaaaaaatctatattttcaaTCTCTAGTTTAGAGAGTTCTctagtagagctgggcgattaattgATTTTATCGATAAATTCGAATTTATAGTTAAGgacaatgtgtttttatgaaaatcgattttctgaGTTTTCTT
>XR_002651284.1
ACTCTGTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGCTGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651285.1
TCTGTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651286.1
ACTCTGTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGCTGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651287.1
GTTTTCATTTAAAGTCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218891 False 811 lncRNA 0.45 5 29621059 29625291
TU218892 True 913 lncRNA 0.45 5 29621059 29625291
XR_002651284.1 False 672 lncRNA 0.49 5 29621196 29625289
XR_002651285.1 False 600 lncRNA 0.50 4 29621196 29625287
XR_002651286.1 False 581 lncRNA 0.48 4 29621196 29625289
XR_002651287.1 False 506 lncRNA 0.49 3 29621196 29625284

Neighbor

gene id symbol gene type direction distance location
LOC111194841 NA coding downstream 16387 29603735 ~ 29604672 (-)
larp6 larp6,LOC103354325 coding downstream 106982 29502115 ~ 29514077 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 174098 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 913914 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 996279 28622083 ~ 28624780 (-)
LOC111194843 NA coding upstream 136377 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 151883 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 191740 29817031 ~ 29818532 (-)
LOC111194846 NA coding upstream 213962 29839253 ~ 29847639 (-)
LOC111194847 NA coding upstream 229018 29854309 ~ 29857547 (-)
G161547 NA non-coding downstream 121732 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 152758 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 226546 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 407978 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 423382 29197247 ~ 29197677 (-)
G161588 NA non-coding upstream 188311 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 350063 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 374455 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 401720 30027011 ~ 30132134 (-)
G161674 NA non-coding upstream 545651 30170942 ~ 30171636 (-)
LOC103037190 NA other downstream 679672 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 968112 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2042141 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2501806 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3275350 26342351 ~ 26345709 (-)
G161711 NA other upstream 690315 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1073879 30699170 ~ 30781708 (-)
tap1 NA other upstream 3026677 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4472637 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4775372 34400663 ~ 34731072 (-)

Expression


Co-expression Network