LOC111194843


Basic Information

Item Value
gene id LOC111194843
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29761668 ~ 29765504 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679988.1
ATGCGGATTATGATCCTTCTCGCCTGCCTGGGCTTCAAACTAGGAGCATGGGAGGCCGCTGAAAAACAGTGCCAAGGGAACAAGGCCTGCAAGGCGACGGTGGTGGCGGCAAACACCGTCGACTCAGACAAACATTGCTTGTTTCTGTTCAGATTAGAGCAAGAAGACACAGCAATGAGACGtcttttcatcatcatcatcatcatcctcgcTACGTTTACAGCTCCAGGAATGAGCACGAAGATCTCCAGTAAGAAGACTGAAAAAGAGattGTTTTGGATGATTATCCAGACTCCGTTGATGATCCATTTGATGGATGCAAAGAAAAAATGCGTGAGCTGATTAGGTCTGAATACCTGGAGAAAGAGTTGAAAGCAGGTGATAGATTTATGAGATTTAACGAAAACTGGAAAAAAGACACATTACATCTTCAGTTAAAAAATGTATCTGATGAGGAGTTGAGAAATCTAACCCTGCGTGCATACACTGGatcttttttcagtattatgaACACTAAAATGCGTACTGGTAAGAAAGACTACATGACCACGTTTGGCCTGATTTCTTTACACTTTTTGATAACGGATGGCATTCAACACCTTAACCCTAAAAACAATTGCCAAACCACTTACCGTTTTGGCAAAgagaaatatgtaataaaagGTAATAAAATGAGATTTGGTAGTTTTACATCTTCTTCACATAACCCCAACTTGAGACAATTTGGTAGAGAGACTTGTTTTATTATTGAGACATGCTTTGGTGCTGATATGTCTGAACTGTCACACTTTAACGAGGCTGAAGTGCTGATACCACCTTATGAAGAATTTAACAAGGTAGATCTTCCAAAAAATAAGATTCCAGAAGAACTTAAGGATTGTGGTCGTGTGTATAAAGTAATGAGCACAAATGTCAAGAAGAACAACATGAACTGTGAATTGTTGAAAACAAGGAAAATGGGTTAAATTGTGAAGCTGTATTGTGTCAACATCCGTTGAAA

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679988.1 True 1001 mRNA 0.39 4 29761668 29765504

Neighbor

gene id symbol gene type direction distance location
LOC111194841 NA coding downstream 156996 29603735 ~ 29604672 (-)
larp6 larp6,LOC103354325 coding downstream 247591 29502115 ~ 29514077 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 314707 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 1054523 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 1136888 28622083 ~ 28624780 (-)
LOC111194844 NA coding upstream 11670 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 51527 29817031 ~ 29818532 (-)
LOC111194846 NA coding upstream 73749 29839253 ~ 29847639 (-)
LOC111194847 NA coding upstream 88805 29854309 ~ 29857547 (-)
LOC111194848 NA coding upstream 96925 29862429 ~ 29866792 (-)
LOC111194805 NA non-coding downstream 136377 29621059 ~ 29625291 (-)
G161547 NA non-coding downstream 262341 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 293367 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 367155 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 548587 29211476 ~ 29213081 (-)
G161588 NA non-coding upstream 48098 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 209850 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 234242 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 261507 30027011 ~ 30132134 (-)
G161674 NA non-coding upstream 405438 30170942 ~ 30171636 (-)
LOC103037190 NA other downstream 820281 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1108721 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2182750 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2642415 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3415959 26342351 ~ 26345709 (-)
G161711 NA other upstream 550102 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 933666 30699170 ~ 30781708 (-)
tap1 NA other upstream 2886464 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4332424 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4635159 34400663 ~ 34731072 (-)

Expression


Co-expression Network