LOC111194846


Basic Information

Item Value
gene id LOC111194846
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29839253 ~ 29847639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679991.1
ATGCGGATTATGATCCTTCTCGCCTGCCTGGGCTTCAAACTAGGAGCATGGGAGGCCGCTGAAAAACAGTGCCAAGGGAACAAGGCCTGCAAGGTGACGGTGGTGGCGGCAAACACTGTCGACTCAGACAAACATTGCTTGTTTCTGTTCAGATTAGAGCAAGAAGACACAGCAATGAGACGtcttttcatcatcatcatcatcctcgcTACGCTTACAGCTCCAGGAATGAGCACGAAGATCTCCAGTAAGAAGGCTGAAAAAGAGATTGTTTTGGATGATTATCCAGACTCCGTTGATGATCCATTTGATGGATGCAAAGATGACATGCGTAAACTGATTAGGTCTGAATACCTGGAGAAAGAGTTGAAAGCAGGTGATAAATTTAGGAGCTTTAAGGAAAACTGGGAAAAAGACACATTAAATCTTCAGTTAAAAAATGTATCTGATGAGGAGTTGAGAAATCTAACCCTGCGTGCATACACTGGATCTTTTTTCAACAATATGAACCCTAAAATGCGTACTAAAAGGAAAGACTACGAGACCACGTTTGGCCTGATTTCTTTACACTTTTTGATAACTGATGGCATTCAACACCTTAACCCTGATAACAAATGCCAAACCACTTACCGCTTTGGCAAAGAGAAATATGTAATAGACAGTAATAAAATGAGATTTGGTAGTTTTACATCTTCTTCACATAACCCCAACTTGAGACAATTTGGTAGAGAGACTTGTTTTATTATTGAGACATGCTTTGGTGCTGATATATCTGAACTGTCACAGTATGACGAGGCTGAAGTGCTGATTCCACCTTATGAAGAATTTAACAAGGTAAATCTTCCAGAGATTCCAGAAGTTAAGGGTTGTGGTCGTGTGTATAAACTAGAGAGCACAAAGGTCAAGAAGAACAACATGAACTGTGAATTGGTcaaaaagaggaaaatggaAACTAACGGAAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679991.1 True 966 mRNA 0.40 4 29839253 29847639

Neighbor

gene id symbol gene type direction distance location
LOC111194845 NA coding downstream 20721 29817031 ~ 29818532 (-)
LOC111194844 NA coding downstream 55846 29777174 ~ 29783407 (-)
LOC111194843 NA coding downstream 73749 29761668 ~ 29765504 (-)
LOC111194841 NA coding downstream 234581 29603735 ~ 29604672 (-)
larp6 larp6,LOC103354325 coding downstream 325176 29502115 ~ 29514077 (-)
LOC111194847 NA coding upstream 6670 29854309 ~ 29857547 (-)
LOC111194848 NA coding upstream 14790 29862429 ~ 29866792 (-)
mapk6 mapk6 coding upstream 298330 30145969 ~ 30185535 (-)
LOC111194849 NA coding upstream 787882 30635521 ~ 30640686 (-)
LOC111194850 NA coding upstream 809733 30657372 ~ 30658445 (-)
G161588 NA non-coding downstream 22654 29813602 ~ 29816599 (-)
LOC111194805 NA non-coding downstream 213962 29621059 ~ 29625291 (-)
G161547 NA non-coding downstream 339926 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 370952 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 444740 29279743 ~ 29394513 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 127715 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 152107 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 179372 30027011 ~ 30132134 (-)
G161674 NA non-coding upstream 323303 30170942 ~ 30171636 (-)
G161690 NA non-coding upstream 441199 30288838 ~ 30289145 (-)
LOC103037190 NA other downstream 897866 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1186306 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2260335 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2720000 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3493544 26342351 ~ 26345709 (-)
G161711 NA other upstream 467967 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 851531 30699170 ~ 30781708 (-)
tap1 NA other upstream 2804329 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4250289 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4553024 34400663 ~ 34731072 (-)

Expression


Co-expression Network