CI01000012_11319849_11326035


Basic Information

Item Value
gene id CI01000012_11319849_11326035
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11319060 ~ 11326904 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11319849_11326035.mRNA
CTATAAATAACTAGTTCAAAACACTCTTAAATGATCTTCTTTTTTTTGTGAATTATTTTAACCAAAATAAAATTACAGTATCATATTTTTGTTTTAGTTGTTTAAAGAAGTAAATATAATAAAACCACACTGGTATACATTCCAACAATAGTCAAGTATAATTAAGGTACATTTTTAAGGGAAAAACTGAATGGGTCAGGTCAAGGCAAGTTGTCACTTAAAGTTGTAAATTTATACAATTTATTAATTACACTATTTGTGGCTAAAACAATGCTTGGTATATATTTATTATGAAATGGCATATTCTTATTTTTTCATGTATTTCAATATGCCTGCTATTATAAAAATTGACTTTTAAAAAATACTTTCATAAATGATTTAAAGACTTTAATTATTTAATGGTAAAAATATTAAAATATTCATAAAAGGTGTGACAGTTAGCCCTAGTCCCCCCTATGTTGTTTGTGCCAACTGTAGTATTGACTATAGTAGGAATTAGTTGAATTGCTTATCCAGTTATGCTTAGCTGTTAGCACACTGGCACCCATCCACTGCAGTGTGTCTAAATGTACACTACGACTAATTTGCTGTATCACGCTCTGGACCAAACCCTTTTCTTATGGAGGTGAGGCAGGCAGTGTGAAGACTTAGCCTGGATTACAGGACTTCAGAGATAGCGCTGAATCCAGCCTCCTGTCTGACATGAATTGATCGGATTAGAAAGGGTGGATTCCATCCTTGAGGGGAAACCAAGCACGTTGTATATAATTGACTTTTTTTTCTCCCTCCATGTCTTGTGGGTTGACAGTGCTAGCAGAAGGGAATACTTTGGTGGGTAAATATCAGAAAGGACTCTGGTTTGACCAGGTTGGCGGAGGCTTAGAAAGCCGATCGATATCACTGGTGTTGAGTTGCAGCGGCAGCCCATGGACACGGCGCAGAGGAAGTGTGATGCGCTGTGATGCTCGACCTGCACATCCACCGAGTGGAATAGACACACATGCTCCAGCTCATCAGAGTGGCATGGATAAGGTTTCATCTCTTTTGGTAAATCCTAGTGTCAAAAATGGAACTCTTACTTACAGCTTTGAATCGGGTACATCCGATATGTTCACACGAATAAAGATTTTACAAAGTGACACGGGGATAAATAAGATCTTGGAGTGCAGAGATCACATTCTTAAAGGAAGACGAGTGGGAAATCAAAGACTGGAATGCTGGGAGAACGCTGGGGAAACTGATGGAGGGTCGGCAGTTCAAAGCAGTTCAACACTCTTGGCGACAAAGGAAGGTGTTGTCACATGCGTGAGATATTCCGGGGCTGAAATGAAGTTGCTCGCCATCAGCGTGTCATCACGGAAGGACATCTCCTCTGTGATGTACGTCGCTTTCTCAGTCTGCCCGTGTAGACCGTCGCGGAGAAGCACATTTCTTCTCAGAGCTGTAACTGACATGACACCTTCTCCTCAGCATGGATCCAGGGATGTGTCTAATCGGCGCTGGCAGAACACTCTCTGCTTAATTTTAGCCATAATGGCTGTGAGGGGAAGGTGGCCAGATGAGTGGCAGGGATCCAGAGGGTTCCACCGCTCGCATTCTCACACCCAGAATCCTCTGTTGTGGCCCGGCTGCCTCTCTGGCTACCTGAGCCTCATGAACACAACAACGCATGCGCATGCATAGTCTCTAGTAATCATATAGTAATCTATATAGCCCAGAGCTCAAGGCATCACTGTTCAAATGCCTTTTTTTTTTTTTTTTTTTTAAAGCGCTGACTTTCTTTTGTTGGTGCTATAGGCTTCTAGACTGGTTGCGAGCAAACTAACATGTGCTCTGATCCAGATCATATTATGTTTTTATTGATAGGTGCATCCTCATCAAAGTAAAGCTTTAGGCTGTTTCTCGTCATTTGCTTTGAATGTGCGCATGTTTTAGAACTACTGTATTACCTGATTCAAACCTTTTTTATTTGAATTGCCTCTTGAGTGGACTTTTTTGCTGTGATATCTATTGATATATCTATTACTTGGAGCATGTCTACAAAACAGGCTGTTTGAAATTCTTCAGGAATGGAGACGATATGTTTTAAAGGAGTTTGTCACATTAAACAAAACCTGGAAGTTGGTGGAGAAAGCGGGAGGTTAAGGTTTTTGTAGAGAAGTGAAGTTCTCATTGAATTTAGCTGTCGCTGCGTGTTCGAATCCTCATGCAAGGCTTGCATTGGGAAGATGTTGACACGTATGGAACAGTGAATGCTGAATTACCTGCTGTTGAAACGTTTTGTATAGCAGGAGTTTTTATTGTGGTTTCACCTTTTTTCCATTCCTCACCTTTACAGTCAGAAAAATTAATTTCCCTGACCTTCGAGTTTTCAGAGCAGCAGGGCTCAAATTCCACATATTACTATTGTGGCTTTTTATTTTACCATGAAATGCATGAAACAGGATAATGAGTGCTCAGGGAATCTACTTATTGATTTTTATTTCAAGGCTAGAAATAATAATTAAAACAGAACAAACCAGCACCTGGTCCTTGGGTGAGTGGTTTTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11319849_11326035.mRNA True 2552 mRNA 0.40 7 11319060 11326904

Neighbor

gene id symbol gene type direction distance location
CI01000012_11277561_11292490 VRK2 coding upstream 26424 11277561 ~ 11292636 (+)
CI01000012_11091957_11093675 CCDC85A coding upstream 225286 11091957 ~ 11093774 (+)
CI01000012_11043669_11044569 NA coding upstream 274419 11043394 ~ 11044670 (+)
CI01000012_11011437_11013922 NA coding upstream 305129 11011364 ~ 11013931 (+)
CI01000012_10922409_10930704 DDX43 coding upstream 387775 10922409 ~ 10931285 (+)
CI01000012_11616967_11694276 NA coding downstream 288643 11615547 ~ 11694284 (+)
CI01000012_11698150_11702986 NA coding downstream 370211 11697115 ~ 11703213 (+)
CI01000012_11859839_11869022 PAPOLG coding downstream 532845 11859749 ~ 11870657 (+)
CI01000012_11874504_11884601 REL coding downstream 547600 11874504 ~ 11885292 (+)
CI01000012_11897443_11903607 PDLIM1 coding downstream 570539 11897443 ~ 11903607 (+)
G76018 NA non-coding upstream 66958 11251817 ~ 11252102 (+)
G75588 NA non-coding upstream 133773 11185061 ~ 11185287 (+)
G75583 NA non-coding upstream 144345 11174487 ~ 11174715 (+)
G75578 NA non-coding upstream 150279 11168553 ~ 11168781 (+)
G75571 NA non-coding upstream 156515 11162228 ~ 11162545 (+)
G76137 NA non-coding downstream 447635 11774539 ~ 11774869 (+)
G76138 NA non-coding downstream 448081 11774985 ~ 11775184 (+)
G76143 NA non-coding downstream 458576 11785480 ~ 11785691 (+)
G76146 NA non-coding downstream 460135 11787039 ~ 11787385 (+)
G75533 NA other upstream 173321 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 1094773 10223697 ~ 10236276 (+)
G73578 NA other upstream 2951433 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 3511205 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 5394755 5922385 ~ 5929186 (+)
G76385 NA other downstream 1303851 12630755 ~ 12675666 (+)
G76374 NA other downstream 1418627 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 1688602 13029435 ~ 13038899 (+)
G76645 NA other downstream 2324955 13651859 ~ 13652234 (+)
G76656 NA other downstream 2376583 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006644 NA non-coding NC_007124.7 CM002897.2 26009497 ~ 26703804 (-)