CI01000012_11799629_11846842 (BCL11A)


Basic Information

Item Value
gene id CI01000012_11799629_11846842
gene name BCL11A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11799629 ~ 11846842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11799629_11846842.mRNA
GAGCCCCTGTCAGCCGTGGTCTCGGAGGAGAGGCAGGAACAGCGCGGGCTGGTACAGGTATCTCCAGAGGGAGACCAGGACCTGCTCACCTGTGGCCAGTGTCAGATGAACTTCCCTTTGGGAGACATCCTTATTTTCATTGAGCACAAAAGGAAGCAGTGCAATGGCACTTTGTGCATGGACAAAGCAGTGGATAAGCCCCCCTCGCCCTCGAACGCTGAGCTTAGGAGAGCGTCCAACCCCGTGGAGGTGGGCGTCCAGGTTACGCCGGAGGATGATGACTGCTTATCGACGTCTTCTCGAGGAATCTGTCCCAAACAGGAAAACGTTACAGGTAAAGATGAGCCCAGCAGCTACACTTGCACAACCTGTAAACAGCCGTTCAGCAGTGCCTGGTTTCTGCTGCAACATGCCCAGAACACTCATGGCTTCCGTATCTACCTTGAGAGCGAGCGCGGAAGTCCGCTCACGCCCCGTGTGGGAGCTCCTTCAGGAATGGGCGCAGATTGCTCCTCTCAACCCCCCTTGCATGGCATCCATCTCCCAGAGGGAAGCCCATTCAACCTGCTACGGATACCCAACTCTGGACGCGACGGACCCCCTCTCCGAGAGGGTCGGTTTCCCCCTACGCCGCCTCTCTTTAGCCCTCCACCCCGCCATCACTTGGACCCTCATCGCATGGAGCACCTGAGCCCGGAGGAGCTGGCTTTGGCCACCCACCACCCGAGTGCCTTCGACAGGGTGCTGCGCCTCAACCCCATACCCATGGATCCCCCAGCTATGGACTTCTCTCGTAGGTTGAGGGAGCTGGCTGGTAACACCTCAGGGTCAACTCCTCCTCTCTCACCCAACCGGCCCAGCCCTATGCAACGGCTACTACAACCATTCCAGTCAGGAACCAAGCCGCCCTTTCTCTCTACCCCTCCCCTACCTTCCATGCAGTCCCCCTCTGGCTCCCAGTCCACCCCAACCCCTCTTACCCAACAGCCCAACACGCCCATGAAGACCAAGTCTTGTGACAAGCTGAAGCGGCACATGAAGACACACATGAACAAATCTTCACCCATGACGGTCAAATCCGACGATGGCTTGTCCACAGCCAGCTCCCCTGAACCGGGAACCAGCGACTTGGTGGGTAGTGCCAGTAATGCCCTCAAGTCCGTGGTAGCCAAATTCAAGAGTAGAAACAACTACCACTTCAGCCTCAACCTTGAGGCTGCACGGCACCACGAAAACAACGGCGGGCGTCTGGGCGCGGGTGAGGATGGGATCCCGCGCTCGCTGCCTGAGGTTATGCAGGGCATGGGCTTGGCTGCCAGCATGCAGCACTACAGTGAGGCGTTTCATCAACACAAGCGAGGAGCCCTAAACTCTGACAATGATGCACATAGGGACATGTGTGATGAGGACTCGGCTCTGGAATCAGACAGAGTGGACGAGGGCTGTGGCTCAGCTATCAATGGCCGAGGCTCATCACCCAGCGAGTCTGCATCCGTTGGTTTGTCCAAGAAGCTCTTACTGGGCAGTCCCAGCTCACTTAGTCCTTTCTCCAAACGAATCAAGCTGGAGAAAGACTTTGACCTCTCTACCCCTACAATCCCCAACACTGAGAATGTCTATTCTCAGTGGTTGGCTGGCTACGCTGCCTCTCGGCAGCTCAAGGACCCCTTTCTGAATTTTGGGGATTCCAGACAATCGCCTTTCGCCTCATCTTCAGAGCACTCCTCAGAGAACGGAAGCCTGCGCTTCTCTACGCCACCAGGGGACCTGGATGGTGGCGTCTCGGGACGCAGCGGGACTGGCAGTGGCGGCAGCACGCCACACCTTGGGGGTCCCGGTCGGCCCAGCTCGAAAGATGGCCGACGCAGTGACACCTGTGAGTTCTGCGGCAAAGTATTTAAAAACTGCAGCAATCTGACAGTGCACCGGCGCAGCCACACAGGCGAGAGGCCTTATAAGTGTGAGCTCTGCAATTATGCCTGTGCTCAGAGCAGCAAGCTAACACGGCACATGAAAACACACGGGCAAGTGGGCAAGGACGTTTACAAATGTGAAATCTGTCAGATGCCTTTTAGTGTGTACAGCACCCTTGAGAAACACATGAAAAAATGGCACAGTGACCGCGCATTGAACAACGAAATTAAAACTGAG

Function

symbol description
bcl11a Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of neuron projection development. Located in nucleoplasm. Implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Biomarker of lung non-small cell carcinoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11799629_11846842.mRNA True 2151 mRNA 0.57 4 11799629 11846842

Neighbor

gene id symbol gene type direction distance location
CI01000012_11585774_11608639 NA coding downstream 190654 11585628 ~ 11608975 (-)
CI01000012_11292683_11315522 NA coding downstream 483611 11292683 ~ 11316018 (-)
CI01000012_11088423_11089301 NA coding downstream 709437 11088141 ~ 11090192 (-)
CI01000012_11068977_11070913 NA coding downstream 728300 11068861 ~ 11071329 (-)
CI01000012_11047566_11050458 NA coding downstream 747217 11047388 ~ 11052412 (-)
CI01000012_11905259_11905909 NA coding upstream 58314 11905156 ~ 11906244 (-)
CI01000012_11925364_11925971 PHS, PCBD1 coding upstream 78157 11924999 ~ 11925971 (-)
CI01000012_12007476_12016114 SEC23IP coding upstream 160575 12007417 ~ 12016114 (-)
CI01000012_12028095_12043862 INPP5F coding upstream 181069 12027911 ~ 12043862 (-)
CI01000012_12047175_12052116 NA coding upstream 199886 12046728 ~ 12052541 (-)
G76938 NA non-coding downstream 16400 11783026 ~ 11783229 (-)
G76937 NA non-coding downstream 33148 11766281 ~ 11766481 (-)
G76936 NA non-coding downstream 33869 11765472 ~ 11765760 (-)
G76933 NA non-coding downstream 38242 11761177 ~ 11761387 (-)
G76932 NA non-coding downstream 38790 11760604 ~ 11760839 (-)
G76946 NA non-coding upstream 12520 11859362 ~ 11859563 (-)
G76949 NA non-coding upstream 23650 11870492 ~ 11871013 (-)
G76951 NA non-coding upstream 38605 11885447 ~ 11885677 (-)
G76914 NA non-coding upstream 50488 11897330 ~ 11900381 (-)
G76956 NA non-coding upstream 57670 11904512 ~ 11904735 (-)
G75608 NA other downstream 1178758 10611915 ~ 10620871 (-)
G74982 NA other downstream 2223657 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 2397661 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 2716140 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 2726172 9071371 ~ 9073457 (-)
CI01000012_12079581_12084139 NA other upstream 232094 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 1107604 12954446 ~ 12957833 (-)
G77287 NA other upstream 1772434 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding CM030143.1 CM030143.1 11613188 ~ 11615245 (+)