mis18a


Basic Information

Item Value
gene id mis18a
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33960956 ~ 33967651 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681463.1
CGGTAGAGTAAGAGGAGTGAAAATCGGCGGGCGGGAGGCGGAGCCGCGCTGTAAACAGACCCGCTCGGACTGAACCATGGCCGGGCAGCTCAGCGCTCTCTCAGACCGCGCGGACGGCACCTACGTGGTGGGCGAAGACCCGCCGGCACCGCAGAGTTGCGGGGCGGGGGAAGAGGACGGGGACGGGGACGCTCCGGCGGTGTTTCTGTGCGGGAAGTGCCGCCGGCCGGTGGGAGACTCTCTGTCCTGGGCTGGAAGCGACGAGCAGCTCAACCAGATCATGCTGAAGAGGGTCCATGACAATATCGTAATTGGAAATGAGCCGTATGTCTCCAGCACACGCAAAGAACCAGGATGCCTTGTTGTGAATCTTGCTTGTCGTGGCTGTGGTTCCACACTCGGAATCATGTACACATCAACCCCAAAAGAGCTGGATTTCAAGAGATCGTATTTCTGCTTTGGTGTAGAAAATATtgagagttATGTATTAGGGTCTGCTGACCAGCAGGTGGCAGTGGTGGACAGTAAAGACATGCCAGTGACACTGGAGCTACAGGAAATTGTTGAGCAGCAAATGATAAAGATCAAAGCTCTGGCAGTGACGATAGGACACAGACTCATGGAGATTGAGCTTGACCTCCAGACTAAGTCAGAAAGCTAATATGGGCTGCACTTAGCTAAACGATGCTAATCAGGTCCTGTGCTCTTTGTCTTTCCTTTAGTTAGATAAAAAGGttctgtgtgttgttttgtttatgtatacgttctgtctctctctttttgtcatCACTTTCCTCATGTTTCTTGCTGGTTTGGTTGTATTAGGCATGTTTGACTGaacatttgatttaaaataacacatttttgtaaagaaaCTTGTTCACCAAAAATCcagtcaaaatattaaaatattatttgtccaataatgtccaaaaaa

Function

NR:

description
protein Mis18-alpha

GO: NA

KEGG:

id description
K11564 MIS18, FASP1; kinetochore protein Mis18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681463.1 True 937 mRNA 0.48 5 33960956 33967651

Neighbor

gene id symbol gene type direction distance location
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding upstream 42215 33911224 ~ 33918741 (+)
synj1 NA coding upstream 54965 33858676 ~ 33905991 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 663761 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 685270 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 1251702 32704931 ~ 32709254 (+)
LOC103026520 LOC108423747 coding downstream 41270 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 545587 34513238 ~ 34530693 (+)
stard13 stard13,LOC108415386 coding downstream 578112 34545763 ~ 34726721 (+)
nbea nbeaa,nbea,LOC107691681 coding downstream 808063 34775714 ~ 35070323 (+)
sertm1 sertm1 coding downstream 1255037 35222688 ~ 35232948 (+)
G180913 NA non-coding upstream 12018 33945665 ~ 33948938 (+)
G180912 NA non-coding upstream 15370 33941889 ~ 33945586 (+)
G180894 NA non-coding upstream 113181 33805237 ~ 33847775 (+)
G180826 NA non-coding upstream 361601 33598348 ~ 33599355 (+)
G180807 NA non-coding upstream 421534 33514522 ~ 33539422 (+)
G180921 NA non-coding downstream 5293 33972944 ~ 33973145 (+)
G180931 NA non-coding downstream 38312 34005963 ~ 34006814 (+)
G180937 NA non-coding downstream 74967 34042618 ~ 34043415 (+)
G180943 NA non-coding downstream 138848 34106499 ~ 34107595 (+)
G181027 NA non-coding downstream 282356 34250007 ~ 34250467 (+)
ufm1 ufm1,LOC107701138 other upstream 893024 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1687158 32264998 ~ 32273798 (+)
G180266 NA other upstream 2527047 31433198 ~ 31433909 (+)
G180235 erg other upstream 2809861 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 6435515 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 205273 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 366925 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1424870 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 1632832 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 1717353 35685004 ~ 35702995 (+)

Expression


Co-expression Network