G181027


Basic Information

Item Value
gene id G181027
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 34250007 ~ 34250467 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245180
AGCACGTtagcctcccagcactggggtcttgggttcaagtccctatctgggtggagtttccatgttctccctgtgtctgcgtgggtttcctccgtggactccggtttcctcccacagtccaaaaacatgtagATCAGGTAAATTGTATACTCTAAATTACCCcgaaaaatgtaatattctaaattgatctggtgtgtttgtgtaaaaaaaaagtgtgtggtatgtatgtaggttgtgtgtgtgtaaatgtgtgtatgactgtgcccagatatgccCAGGTACTCTGTcatgggtaaatgctgtagtgctcgatgcagtcctccaggtggatggttgtttccggttgagagtacgctgtccgctattggctgctgcttctcaccggtgtgtggatgtaatgtgcttgtgtgtaaaaaaaaaaaaaaaacgtgtaaattgtaaagcgtccatGGGTTTCTAGA

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko01040 Biosynthesis of unsaturated fatty acids
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU245180 True 461 lncRNA 0.45 1 34250007 34250467

Neighbor

gene id symbol gene type direction distance location
LOC103026520 LOC108423747 coding upstream 126336 34008921 ~ 34123671 (+)
mis18a NA coding upstream 282356 33960956 ~ 33967651 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding upstream 331266 33911224 ~ 33918741 (+)
synj1 NA coding upstream 344016 33858676 ~ 33905991 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 952812 33286435 ~ 33297195 (+)
LOC103024324 kl coding downstream 262771 34513238 ~ 34530693 (+)
stard13 stard13,LOC108415386 coding downstream 295296 34545763 ~ 34726721 (+)
nbea nbeaa,nbea,LOC107691681 coding downstream 525247 34775714 ~ 35070323 (+)
sertm1 sertm1 coding downstream 972221 35222688 ~ 35232948 (+)
rfxap rfxap coding downstream 983373 35233840 ~ 35239425 (+)
G180943 NA non-coding upstream 142412 34106499 ~ 34107595 (+)
G180937 NA non-coding upstream 206592 34042618 ~ 34043415 (+)
G180931 NA non-coding upstream 243193 34005963 ~ 34006814 (+)
G180921 NA non-coding upstream 276862 33972944 ~ 33973145 (+)
G180913 NA non-coding upstream 301069 33945665 ~ 33948938 (+)
G181033 NA non-coding downstream 16758 34267225 ~ 34268813 (+)
G181034 NA non-coding downstream 21422 34271889 ~ 34322693 (+)
G181036 NA non-coding downstream 59658 34310125 ~ 34391769 (+)
G181045 NA non-coding downstream 100417 34350884 ~ 34352042 (+)
G181056 NA non-coding downstream 162340 34412807 ~ 34415416 (+)
ufm1 ufm1,LOC107701138 other upstream 1182075 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1976209 32264998 ~ 32273798 (+)
G180266 NA other upstream 2816098 31433198 ~ 31433909 (+)
G180235 erg other upstream 3098912 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 6724566 27524302 ~ 27525441 (+)
LOC103024954 LOC108423745 other downstream 84109 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1142054 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 1350016 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 1434537 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 1565568 35816035 ~ 35842871 (+)

Expression


Co-expression Network