LOC111195005


Basic Information

Item Value
gene id LOC111195005
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2215189 ~ 2218683 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651405.1
TTAGTCACAGTCACTTCTGCCATATCCTCCAtctttaaaaacaatagaaacagctgaacataaggtttaaatgccatttaaatgtctcaatgttgtttaaacatggaggATATTGATAGTTAttcaataaatatgtatatcagttgtgtttgggcactttaaaaaaaataacacacataGTTGAGTGAAACCGTCCATGGTTATTAGATCCAAACTAAGACCATTTCTTATGACTGAATCAAATGTTGGTCCTTTGGCACATTTTACACTAGCTATTTTACTTCAGACCAAATGTGTGAAAGCAAGGCAACTAAGCCCTAACCACCCCTGGGGTTGAGTGTGTAAAAAGGGCAAATTCCTAGGTGTGAAAGACACCTGGTAATTGAAtggttcttcttcttccttcagACTTAATGGTCATGTCTCTACAGGCCCAATATTAGCACCTTTTTATTCAAACTACTGATGGAAATCACAGGACTTTTCAAGATATATAATCACGAAGGGTTGCGTTCAGAAGCAAGAGTgaggttagtgaggtcaggatgctgaACGATCACCACTCTAATTCAAACCCTTAACTTATGCCACTctgtggtggctcagtggttaaaGCACTGAGTTATTGATGAAAGCGTTGTAGATTTGATACCTGGGTTCAGCAAGGTTTCAGCCACCATTCAGCCTTTGAGAAAGGCCCTTTCTTAACCCAGAGAGAACCCCAGAATTGCAGTTCTTATAAGGTTTAAGCCAGAGAATGTTTACAGATAAAGTCACGCCCTTCAACAGAAAGATACCACACCGAGAGATACCAACGATATTAGCCTGCTGGTTGTGCAGTGAGCAGCGGAGAGTCGGCATGTTGGTGTGGAGATCTATGCAAGTGTAGCAGccattaaaagataaaaaaaaattatcttttGTGCATTATCGAGCCAAATGTTACAAACTACTCATAAGGTTTTGTCCGATTTTATTGgtgatttaaattgttttaaaaacgaTAATAGGATCTTTAGTTTCCGGTATTGTATTTTACCAACacaaatatgcaataaaatTTTAGAAAAACTACACGCTATACACTAGAACTAAGGGGCATGTTtagtagtgaaagtaagagcatttccacacagacacacacatgcacatacattcTCTTACACACCAggtacacacacattctcttacagttacacacacacactcatatacattCTCTTACACAGTAATACACAAATTCTCAGTAATACACACGCTCTTAAACACACAGTTGCACAGTTACACACAAATTAGTTTACATGCACAGTTACACGCgcgcgcacgcacgcacgccGTTACACAAACAACATACACGCACGCACGCGCCCAAAGCTCACAGCTTCCTCCGTATTACGTAACATGGAGCGCTGCtagttagcatgctagctaacgctaaaaCCAAAGCGCGCGCGcatcaaaacaaataataaaatacgaCAAACGACGACAAATATCTTCTTAAAACGTTCCCAAACGCAGTAAACATTAACGACACGACATGACACTTGATGTGTGACAGTGTTTGGCTGACATTTGCTGGCGAACGCGGAGAGAAGTTTCAAAATGGGCTGTCATCCTTCATAATGATCCTCTTCACCAGGACGACGCGGCTGGGCTGCCTGGGCTCCTTCCCCGGCTGGGCCATCTCCTCACAGATCACCGGAGTCAGATAGAAGCCGTGCTGGGTGCATATCTTCGGTGCTCCGGCTCCTTCCAGGGTGCCTCCCTGCTCCGAGCCCGAACAGGCTGGCCGTGTCTGCCGCGGTAATTCCCCCCAAATCCGAGGCTCTGAGCGGGGACGACGCTTCGAGGTAGCTACGCTAAACTAGCAGCGGAGGTAACGAGCAGAGAGCGCAGAGATAAGCAAGGATGAACCACCGGGGGATGTGTTTTCGGATTGTCggacactagagggcgctgccgAGTGAGaccaaaaatataaattatatgcaGCATTTGAgcaaaatcataattttaataatatacaaaaaggtttaaacagtttttgttttgttatttaatgttttattggtttcAAAGTAATTTCAATGTACAGGAAAATAGCACATTAATTAATCCCACCAGTGTTATAAGCACTAAAATATtctatgaaataaataaagcaataaatacAGAAGTTACATATGAAATGTTACATAGCTACAAGTCAATCAGATTGTCACATTTCAtagtaaaatttatattttgtgttaaaGTCTTTAAAACGTCACATAGCAAGCTTAGAAACATGTGGAATACTGACATTAATACATTTGTAGATGATAATTCCTTAGGAACTTAGTATCGAGCAAAATGAAAGATTCAAatccttgtaaaaaaaagttaagatctattcaaatatataaaaaaacttgtGATTCAGTGAATTAAAAGATGAAGATGATCTTATAAGAATACCTCGCTGCTCCTGTTCTGTCTTACACTGTGAAAACTTTCTAATGATTTCTAAAAAgtaagaatttcattgtacaatGTAACTGCTTGTTTCTGCTGTGCCTATGACAATAAAAactcttgaatcttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651405.1 True 2589 lncRNA 0.40 2 2215189 2218683

Neighbor

gene id symbol gene type direction distance location
LOC103042865 LOC108441065 coding downstream 1640 2200486 ~ 2213549 (-)
spin1 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 15793 2184522 ~ 2199396 (-)
nxnl2 nxnl2,LOC107751566,LOC107740048 coding downstream 31449 2180697 ~ 2183740 (-)
LOC103031799 NA coding downstream 37768 2170535 ~ 2177421 (-)
LOC111195004 LOC108441067,LOC108277051,LOC106565566,LOC107665770 coding downstream 46547 2144387 ~ 2168642 (-)
LOC103032255 LOC108410547 coding upstream 113539 2332222 ~ 2500749 (-)
LOC103034687 NA coding upstream 470599 2689282 ~ 2694671 (-)
LOC103034372 NA coding upstream 556201 2774884 ~ 2779203 (-)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding upstream 561435 2780118 ~ 2824563 (-)
LOC103033194 LOC103033194 coding upstream 701356 2920039 ~ 2928986 (-)
G172842 mier3,LOC108441071 non-coding downstream 90033 2100438 ~ 2125156 (-)
G172845 mier3,mier3a,LOC108441071,LOC108277354,LOC107751873,LOC107568605,LOC107665797 non-coding downstream 114923 2094650 ~ 2100266 (-)
G172838 ash2l,LOC107704134 non-coding downstream 141918 2061357 ~ 2073271 (-)
G172691 kmt5a,LOC108425183 non-coding downstream 553369 1657138 ~ 1661820 (-)
G172705 NA non-coding downstream 680009 1530551 ~ 1535180 (-)
G172869 NA non-coding upstream 109761 2328444 ~ 2328726 (-)
G172892 NA non-coding upstream 162048 2380731 ~ 2382842 (-)
G172893 NA non-coding upstream 173520 2392203 ~ 2393806 (-)
G172894 NA non-coding upstream 211744 2430427 ~ 2432864 (-)
G172897 NA non-coding upstream 272618 2491301 ~ 2491948 (-)
G172839 NA other downstream 93111 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 104764 2107104 ~ 2110425 (-)
G172821 NA other downstream 138800 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 580497 1630541 ~ 1634692 (-)
LOC103036368 pde4d,LOC108425192,LOC107709115,LOC107704165,LOC107653658,LOC108276982 other downstream 898965 1097790 ~ 1316224 (-)
triap1 triap1,LOC106568193,LOC106564228 other upstream 718063 2936746 ~ 2938724 (-)
G173057 LOC108435141 other upstream 959746 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 1518679 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 1669715 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 2030136 4248819 ~ 4262441 (-)

Expression


Co-expression Network