LOC103033194 (LOC103033194)


Basic Information

Item Value
gene id LOC103033194
gene name LOC103033194
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2920039 ~ 2928986 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250243.3
AAGCACCACAGGTTTAACACgagaacactgaaacactgaagatTATCAACCTATGAGAGCTTTCTTCAGCGCAGAGCTGCTTCCAGGTTTTCAGGAATCACTTTGGAGAGACGGTGGAAACATGTCTCATCACACCTCCAGGTCAGGTGTGCAGAAACTGGTTCTGGGTTTCCTCTTCATCTGCGTCACCATGGTGCTTTATTGCTTTTCTACACCTGGATTGCAGGCTGACACACAGAGATTACCAGTGGCCGCTCCATGTAGACATCCTCCAGCTCAAAAGACACAAGAACAGAAGCTGTTCCATGTACCTCTGGGCATCAGCAAGATGGAGCGCTGCACGCCGAAGGTCAACTTGATGTTCCTGAAGACCCACAAGGCGGCAAGCAGCACCATCCTCAACATCCTCCTACGCTTTGggcagaagaaccagctgaggTTTGCTCTTCCCGACAGTCGCAACGACTTCTTGTACCCGGCTCCTTTCGACCACACTCTGGTGAAGGACTACAGGCCTGGGGAGTGCTTCAATATCTTGTGCAACCACATGCGCTTCAATGCGCCTGAAGTAGAGGCTCTTCTTCCAGATGATGCCTTCTTCTTCACCATCCTCAGAGACCCAGCACTAGTGTTCGAGTCATCCTTTCACTACTACAACCGGGTGATGCCCCTGACCTGGAGGATCCGAGGGGAGGACAAACTGAGTGCCTTTATTAAAGAGCCTGAGAGGTACTTCAGTCCAGATGGGATTAATTCCTTTTACCTCAAGAACTTGCAGCTTTTTGATCTTGGGCACGACAACACCTTGGAGCCAGAGGACGTAGCCGTGGACCAGGCCATCCAGGCCATTTCTGAGCGCTTCCAGTTGGTTCTGATTGCTGAACACTTTGAGGAATCTCTCATTCTGCTCAAGGACGCTCTCTGCTGGCAGATGGACGACTTGCTCTATTTTAAACTCAACGCCCGCAGAGGTGCGAGTGTGTCCCTGCTCACACCTGAACTCAAAGCCAAGGGCCGAGCCTGGAACGGTGCAGACTGGAGGCTGTACCGGCACTTTAACGCAACCTTATGGGCCAGGGTGGACGCCTACGGCAGGAAGCGGATGGAGAGGGACGTGAGGGAACTGCGCAGGAGGAACATGGAGATGTCGGCCATCTGCATCGACGGCGGGAAGGCAGTGGAGGAGGGAGACATAAGGGACGAAAGCATGAAGCCCTGGCAGCCGCTGGGAGAAAACTCTATTTTAGGATACAATCTGAGGACCAACATTGACCAGGAGTACAGCGAGCTCTGCCGAAAAATGCTCACCCCTGAGATCCAGTACCTGACAGATCTAGGAGTCAATCTGTGGATCACACGATTATGGGGATGGGTTAAAGGTATTATAGCATTATAGcaactagaaaaataaatagatgtgGACTTACTGTGTTTATGGACTTACTTCTTTGATTTCAAACTTCAGaatatttaaatgcataaaatcctttttaataaaatatccatTATATGGACAGAATATA

Function

NR:

description
galactosylceramide sulfotransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250243.3 True 1523 mRNA 0.50 3 2920039 2928986

Neighbor

gene id symbol gene type direction distance location
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding downstream 95476 2780118 ~ 2824563 (-)
LOC103034372 NA coding downstream 140836 2774884 ~ 2779203 (-)
LOC103034687 NA coding downstream 225368 2689282 ~ 2694671 (-)
LOC103032255 LOC108410547 coding downstream 419290 2332222 ~ 2500749 (-)
LOC103042865 LOC108441065 coding downstream 706490 2200486 ~ 2213549 (-)
LOC103030982 sgsm1b,LOC108435151,LOC108276524,LOC107653775 coding upstream 13293 2942279 ~ 2970225 (-)
rfx3 rfx3,LOC107710408 coding upstream 272072 3201058 ~ 3232358 (-)
LOC103030567 NA coding upstream 306277 3235263 ~ 3273679 (-)
LOC103043301 LOC108435125,LOC107752623,LOC103360637 coding upstream 1090211 4019197 ~ 4038726 (-)
egflam NA coding upstream 1134257 4063243 ~ 4084926 (-)
LOC103032756 NA non-coding downstream 1282 2881274 ~ 2918757 (-)
G172958 NA non-coding downstream 145213 2774533 ~ 2774826 (-)
G172904 NA non-coding downstream 293403 2626305 ~ 2626636 (-)
G172900 NA non-coding downstream 338186 2581412 ~ 2581853 (-)
G172897 NA non-coding downstream 428091 2491301 ~ 2491948 (-)
G172966 NA non-coding upstream 2042 2931028 ~ 2935091 (-)
G172985 NA non-coding upstream 46029 2975015 ~ 2982780 (-)
G172986 LOC108435150,LOC108277167 non-coding upstream 47759 2976745 ~ 2979720 (-)
G172988 LOC108435150,LOC107688934,LOC108277167 non-coding upstream 54284 2983270 ~ 2984563 (-)
G173014 NA non-coding upstream 159286 3088272 ~ 3088517 (-)
G172839 NA other downstream 797961 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 809614 2107104 ~ 2110425 (-)
G172821 NA other downstream 843650 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 1285347 1630541 ~ 1634692 (-)
LOC103036368 pde4d,LOC108425192,LOC107709115,LOC107704165,LOC107653658,LOC108276982 other downstream 1603815 1097790 ~ 1316224 (-)
triap1 triap1,LOC106568193,LOC106564228 other upstream 7760 2936746 ~ 2938724 (-)
G173057 LOC108435141 other upstream 249443 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 808376 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 959412 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 1319833 4248819 ~ 4262441 (-)

Expression


Co-expression Network