G172985


Basic Information

Item Value
gene id G172985
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2975015 ~ 2982780 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234221
TCAAGTCAATCTTGTGCCTGAAAATACACTGGAGTATTTTTCATGCCAAATTATCTTGCACATTTATTTatgcaacacaaaaaaaaaaagttttttaatttgtatgtattatatggcacttttatataaaagtaaaaaaaaaatacagctctggaaagaaagagagcacttaaaaatgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagctgatcatcaaaccaaactgaactgcttgaatttctgcaccaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaaactgtgatttaaaaccagggttattccaccaaatattgatttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234221 True 415 lncRNA 0.32 2 2975015 2982780

Neighbor

gene id symbol gene type direction distance location
LOC103030982 sgsm1b,LOC108435151,LOC108276524,LOC107653775 coding downstream 4790 2942279 ~ 2970225 (-)
LOC103033194 LOC103033194 coding downstream 46029 2920039 ~ 2928986 (-)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding downstream 150452 2780118 ~ 2824563 (-)
LOC103034372 NA coding downstream 195812 2774884 ~ 2779203 (-)
LOC103034687 NA coding downstream 280344 2689282 ~ 2694671 (-)
rfx3 rfx3,LOC107710408 coding upstream 218278 3201058 ~ 3232358 (-)
LOC103030567 NA coding upstream 252483 3235263 ~ 3273679 (-)
LOC103043301 LOC108435125,LOC107752623,LOC103360637 coding upstream 1036417 4019197 ~ 4038726 (-)
egflam NA coding upstream 1080463 4063243 ~ 4084926 (-)
wdr70 wdr70 coding upstream 1156526 4139306 ~ 4211123 (-)
G172966 NA non-coding downstream 39924 2931028 ~ 2935091 (-)
LOC103032756 NA non-coding downstream 56258 2881274 ~ 2918757 (-)
G172958 NA non-coding downstream 200189 2774533 ~ 2774826 (-)
G172904 NA non-coding downstream 348379 2626305 ~ 2626636 (-)
G172900 NA non-coding downstream 393162 2581412 ~ 2581853 (-)
G172988 LOC108435150,LOC107688934,LOC108277167 non-coding upstream 490 2983270 ~ 2984563 (-)
G173014 NA non-coding upstream 105492 3088272 ~ 3088517 (-)
G173039 NA non-coding upstream 169711 3152491 ~ 3153071 (-)
G173054 NA non-coding upstream 210116 3192896 ~ 3197504 (-)
G173076 NA non-coding upstream 289812 3272592 ~ 3273338 (-)
triap1 triap1,LOC106568193,LOC106564228 other downstream 36291 2936746 ~ 2938724 (-)
G172839 NA other downstream 852937 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 864590 2107104 ~ 2110425 (-)
G172821 NA other downstream 898626 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 1340323 1630541 ~ 1634692 (-)
G173057 LOC108435141 other upstream 195649 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 754582 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 905618 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 1266039 4248819 ~ 4262441 (-)
LOC103022339 LOC108441783 other upstream 1612715 4595495 ~ 4691686 (-)

Expression


Co-expression Network