G172900


Basic Information

Item Value
gene id G172900
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2581412 ~ 2581853 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234115
ttttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctctgcttttagactctttggcctgtttttctgcgctagaaatgcacactctctctgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234115 True 442 lncRNA 0.45 1 2581412 2581853

Neighbor

gene id symbol gene type direction distance location
LOC103032255 LOC108410547 coding downstream 80663 2332222 ~ 2500749 (-)
LOC103042865 LOC108441065 coding downstream 367863 2200486 ~ 2213549 (-)
spin1 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 382016 2184522 ~ 2199396 (-)
nxnl2 nxnl2,LOC107751566,LOC107740048 coding downstream 397672 2180697 ~ 2183740 (-)
LOC103031799 NA coding downstream 403991 2170535 ~ 2177421 (-)
LOC103034687 NA coding upstream 107429 2689282 ~ 2694671 (-)
LOC103034372 NA coding upstream 193031 2774884 ~ 2779203 (-)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding upstream 198265 2780118 ~ 2824563 (-)
LOC103033194 LOC103033194 coding upstream 338186 2920039 ~ 2928986 (-)
LOC103030982 sgsm1b,LOC108435151,LOC108276524,LOC107653775 coding upstream 360426 2942279 ~ 2970225 (-)
G172897 NA non-coding downstream 89464 2491301 ~ 2491948 (-)
G172894 NA non-coding downstream 148548 2430427 ~ 2432864 (-)
G172893 NA non-coding downstream 187606 2392203 ~ 2393806 (-)
G172892 NA non-coding downstream 198570 2380731 ~ 2382842 (-)
G172869 NA non-coding downstream 252686 2328444 ~ 2328726 (-)
G172904 NA non-coding upstream 44452 2626305 ~ 2626636 (-)
G172958 NA non-coding upstream 192680 2774533 ~ 2774826 (-)
LOC103032756 NA non-coding upstream 299421 2881274 ~ 2918757 (-)
G172966 NA non-coding upstream 349175 2931028 ~ 2935091 (-)
G172985 NA non-coding upstream 393162 2975015 ~ 2982780 (-)
G172839 NA other downstream 459334 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 470987 2107104 ~ 2110425 (-)
G172821 NA other downstream 505023 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 946720 1630541 ~ 1634692 (-)
LOC103036368 pde4d,LOC108425192,LOC107709115,LOC107704165,LOC107653658,LOC108276982 other downstream 1265188 1097790 ~ 1316224 (-)
triap1 triap1,LOC106568193,LOC106564228 other upstream 354893 2936746 ~ 2938724 (-)
G173057 LOC108435141 other upstream 596576 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 1155509 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 1306545 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 1666966 4248819 ~ 4262441 (-)

Expression


Co-expression Network