G172966


Basic Information

Item Value
gene id G172966
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2931028 ~ 2935091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234200
GAATACACTTTTAGAGACCGACCACACATAAATATTACTAAATTCTTAGCTAAAAGAAATTCCAGAAAGGAGGAAAACCTTTTGACCTACCAGTCACTATAACCCGGAACTCAGATCGGCGAGATGGAGGTCCAAATCTTCCCCTtggtcctcctcctccaccgaCAGATCCACCAAATTTGGATCCTGAGGAACGAGGATATTCCACACGCAGCTTACAGTCTCCAAATCCATATCCATTCCTTCCATAGACAGCATCCTCCGCATCCCTATGGGAAGAGAGTAAAGTGCTCCTAACTTTCTTTCTACTGAGGGACACTTGAGAAATGTCTCCTCCATGTGTTTCCTGacgtcagtcagtcagtgagggTGAAAATGAAACATCAGCCCTGGAACTCACCGTGGGTCCTCAAAACGAACAAAGGCAAAGGGGATGGTGCCTCGGTTGTTCTTCAGCTCGATATCCCGAATTTTTCCATATTTGAAGAAGAGATCCTCAATGTCCCTCTCCTGCACGTCCATGGGAAGGTTCCCCACATAGATCCTCCCGTCCGCCATAGCTCAAACCGGCCTTGCACAAACTGAACGGACCTGCGGATCTTCGAGGAGATACAGGGTTCCACAAAAGAGTGTTGAGGGACAATCCCGATTCAAGTCCGTCCTCCTAAAAGTGTCCTAATTAACTAAACTTTGGGTAGAGCAGCAGAAGTAGTAGTACATGTTGAGCTTTAGTAACACATCATAGGACCTCTCCAAGACCTCATCAGACTCTGAAAAACTGCCCGTGAAATGAAGCTGCCGTTAGCTGCCCGAAGCTAATCGACCTCCCCGCCGCTTCCTCACCAGGAAACGTGTGGTGCACGCAGACCACGCCCACACAGACACGCCCCATTTGTGATACCACGC

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU234200 True 906 lncRNA 0.49 3 2931028 2935091

Neighbor

gene id symbol gene type direction distance location
LOC103033194 LOC103033194 coding downstream 2042 2920039 ~ 2928986 (-)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding downstream 106465 2780118 ~ 2824563 (-)
LOC103034372 NA coding downstream 151825 2774884 ~ 2779203 (-)
LOC103034687 NA coding downstream 236357 2689282 ~ 2694671 (-)
LOC103032255 LOC108410547 coding downstream 430279 2332222 ~ 2500749 (-)
LOC103030982 sgsm1b,LOC108435151,LOC108276524,LOC107653775 coding upstream 7188 2942279 ~ 2970225 (-)
rfx3 rfx3,LOC107710408 coding upstream 265967 3201058 ~ 3232358 (-)
LOC103030567 NA coding upstream 300172 3235263 ~ 3273679 (-)
LOC103043301 LOC108435125,LOC107752623,LOC103360637 coding upstream 1084106 4019197 ~ 4038726 (-)
egflam NA coding upstream 1128152 4063243 ~ 4084926 (-)
LOC103032756 NA non-coding downstream 12271 2881274 ~ 2918757 (-)
G172958 NA non-coding downstream 156202 2774533 ~ 2774826 (-)
G172904 NA non-coding downstream 304392 2626305 ~ 2626636 (-)
G172900 NA non-coding downstream 349175 2581412 ~ 2581853 (-)
G172897 NA non-coding downstream 439080 2491301 ~ 2491948 (-)
G172985 NA non-coding upstream 39924 2975015 ~ 2982780 (-)
G172986 LOC108435150,LOC108277167 non-coding upstream 41654 2976745 ~ 2979720 (-)
G172988 LOC108435150,LOC107688934,LOC108277167 non-coding upstream 48179 2983270 ~ 2984563 (-)
G173014 NA non-coding upstream 153181 3088272 ~ 3088517 (-)
G173039 NA non-coding upstream 217400 3152491 ~ 3153071 (-)
G172839 NA other downstream 808950 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 820603 2107104 ~ 2110425 (-)
G172821 NA other downstream 854639 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 1296336 1630541 ~ 1634692 (-)
LOC103036368 pde4d,LOC108425192,LOC107709115,LOC107704165,LOC107653658,LOC108276982 other downstream 1614804 1097790 ~ 1316224 (-)
triap1 triap1,LOC106568193,LOC106564228 other upstream 1655 2936746 ~ 2938724 (-)
G173057 LOC108435141 other upstream 243338 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 802271 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 953307 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 1313728 4248819 ~ 4262441 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) srsf9 sfrs9 misc NC_048569.1 CM023223.2 37917781 ~ 37921282 (+)
mexican tetra (Astyanax mexicanus) LOC103041054 NA misc NW_019172906.1 APWO02000027.1 6977696 ~ 7001090 (+)