LOC103034372


Basic Information

Item Value
gene id LOC103034372
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2774884 ~ 2779203 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606092.2
TACAGACTTTTAATTTGGCTTCTTAATAAATCTCAATGGAAGCTGCAGGTCTGCTAACAAGAACTGATAGCCATTAGCTAACCATTCCTGGAGCCACAAAACCACCCAGTGGGAGGGTTTAAACACTGAGGGATCTGCCTATTGGCTAGCTGGGCTGGGCCAGCGTTAAATaagacaatacaatacaatacgctctgcttcatttaatttaatgctgGTCCTCCAGTGTTCTCCGGCTTGTTTAAGTTCAGTCAGATTGATCATATTAAACCATAAACAAACGAAACCAACTTAACCACCTTGGAAAGCTTGAGCTTTTCCGTTGGGGCAAATCAATAAAACCTAAAGTTAGTTTAACCTCAGTTATGaccactttcttttctttttcttttttgtttttgtggctCCTCGTTCTTGCGGGTTTGTATAAAGGGGAAGTAGAGAAAAGTTCTTGTCTTTCACACTCTGGGTTCTGTAGTTTCCTTTCACATGCTCACATTCACCTTCAGTTTCTCACTGTCTTAACTGTAAGTTTAAAGTTCAGTAATGTTCTTGTTTTCTTGCTgttattttagagttttaattcatttttaattttaaagccGTTTCCTTATATTTAGAACTCTTTGTAAGTTTTTGTACGTAAAActctttaaatgtataaaatgtaatatcttATATTTCTCTTGGTAGCAGATCACTGTAGCAGTAATGTAAGATTTATTCACGGCAATTCACTCACTAGACTTGTTTTAAAGTGATTTAGCTCCTTTGGCTGAGAAATTAATTCAGGAAATAACAGATTTGATCTGGAAATgatgcttgaaacctgtggaaTAAGaccttttaaatgtataatacaccttaaaaataggaaataattttccttttttgtcttATAGTggttttttatgtgtgtttttgtggttCAGCGTGACCCCGGCTGGGCTGCGTTGGCGGCTTGACCACAGTATGTAAATTACAGGGTGTCTATTTACAGCTGATTTGATGAGGTTGATTGCATAAACTGCGTCTGTGTTCCTGAGGATTTCCTTTCACTTACTTTTCGAGGAGAAGCTGTTTGGTGACGGAGCGCTTTGGTTCAGCTGGTAacgagaagaagaagagctcaGTAAGTTCTACTGGATTTCCCAAAGGAGATTACAATGGATACAATGGATTATAACGAGTCATACTCGGACAATTTTACAACGGATGACTATAATTACACAGACTACGATGTCTCTTCTCACGAAGACAACAACCACCCCTTCAGTGTGGTGTCACTGGTCTTCTACTGCCTGACCTGCGCTCTCGGAGTTCCTGGGAACATCCTGGTGGTGTGGATCGCTGGTTTGAAGATGAAGAGGACGGTGAACACCACCTGGTTTCTTAACCTGGCCATTGCTGACCTCCTCTGCTGCCTCTCTATACCATTCACAGTAGCCGACATCCTCATGAAAAACCACTGGCCGTACGGGAACGTCATGTGCAGGGTCCTGCCGGCCGTCATCGTTCTCAACATGTTCGCCAGCGTCTTCACGTTGAACCTCATCGGCTTGGATCGCTTCGTCCAGGTCGTTAAACCGGTTTGGTCTCAGAATAACCGTAGTCTAGGATTGGCTGCTGCCTGCTGTGGGCTGGCCTGGGTCCTGGCCTTGTTACTTAGCTTGCCCAACATGATTTTTCGTAAGGTTATTACAATCACCGAACTGGAAGTAACCATTTGCACGTTCCATTCCGGCAGTGGTGACTATGAGATGACCGAATCCCATGAAGTAGACGAAGCCTTCAGAACATTGACCCTCGTCAGGTTCCTGCTGGGCTTCCTGGTACCCCTGCTCTCCATCGCAGCGTGCTACGCCCTCATCGCCCGCAAGGTTAGCCGCAGCCAGTTCCGCTCCGGAAGAGCGTTCCGGATCATGGTGGTGGTCGTCGTGGCCTTCTTCCTGTCCTGGCTGCCGTATCACGTGCTAGGCTTGATGGACGTCTACGGTTCTCCAAAAGTTTCCGAACTGGCCAAAACCGTAGACCCACTGGCCATCTCTTTGGCGTACGTCAACAGCTGCATGAACCCGGTGCTGTACGTCTTCATGGGGCAGGACTTCAAAGAGAAGGTTAAGCTGTCTCTGAGGAGAATCTTCGAGAGAGCATTCAGTGAAGATGGCACTCAGTGTTCCGGGAACTCCAGAGGACTTCATTCTCAAACCACTACCAAAACATCGGAGGCACAAATTTGATCGATTTGTATTAGAGCTTTGCATATTATCGCAAATTTACTgatgcatttta

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04010 C5AR1, CD88; C5a anaphylatoxin chemotactic receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606092.2 True 2292 mRNA 0.44 2 2774884 2779203

Neighbor

gene id symbol gene type direction distance location
LOC103034687 NA coding downstream 80213 2689282 ~ 2694671 (-)
LOC103032255 LOC108410547 coding downstream 274135 2332222 ~ 2500749 (-)
LOC103042865 LOC108441065 coding downstream 561335 2200486 ~ 2213549 (-)
spin1 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 575488 2184522 ~ 2199396 (-)
nxnl2 nxnl2,LOC107751566,LOC107740048 coding downstream 591144 2180697 ~ 2183740 (-)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007 coding upstream 915 2780118 ~ 2824563 (-)
LOC103033194 LOC103033194 coding upstream 140836 2920039 ~ 2928986 (-)
LOC103030982 sgsm1b,LOC108435151,LOC108276524,LOC107653775 coding upstream 163076 2942279 ~ 2970225 (-)
rfx3 rfx3,LOC107710408 coding upstream 421855 3201058 ~ 3232358 (-)
LOC103030567 NA coding upstream 456060 3235263 ~ 3273679 (-)
G172958 NA non-coding downstream 58 2774533 ~ 2774826 (-)
G172904 NA non-coding downstream 148248 2626305 ~ 2626636 (-)
G172900 NA non-coding downstream 193031 2581412 ~ 2581853 (-)
G172897 NA non-coding downstream 282936 2491301 ~ 2491948 (-)
G172894 NA non-coding downstream 342020 2430427 ~ 2432864 (-)
LOC103032756 NA non-coding upstream 102071 2881274 ~ 2918757 (-)
G172966 NA non-coding upstream 151825 2931028 ~ 2935091 (-)
G172985 NA non-coding upstream 195812 2975015 ~ 2982780 (-)
G172986 LOC108435150,LOC108277167 non-coding upstream 197542 2976745 ~ 2979720 (-)
G172988 LOC108435150,LOC107688934,LOC108277167 non-coding upstream 204067 2983270 ~ 2984563 (-)
G172839 NA other downstream 652806 2118878 ~ 2122078 (-)
setd9 setd9 other downstream 664459 2107104 ~ 2110425 (-)
G172821 NA other downstream 698495 1975003 ~ 2076389 (-)
LOC103046776 cdk2ap1,LOC103046776,LOC108425184,LOC102226456,LOC105913191 other downstream 1140192 1630541 ~ 1634692 (-)
LOC103036368 pde4d,LOC108425192,LOC107709115,LOC107704165,LOC107653658,LOC108276982 other downstream 1458660 1097790 ~ 1316224 (-)
triap1 triap1,LOC106568193,LOC106564228 other upstream 157543 2936746 ~ 2938724 (-)
G173057 LOC108435141 other upstream 399226 3178429 ~ 3181005 (-)
bmpr1b bmpr1b,LOC108435137,LOC106564072,LOC105901127 other upstream 958159 3737362 ~ 3886676 (-)
LOC103043607 LOC108435134,LOC108277016 other upstream 1109195 3888398 ~ 4005681 (-)
nup155 nup155,LOC107692018 other upstream 1469616 4248819 ~ 4262441 (-)

Expression


Co-expression Network