G190795 (LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492)


Basic Information

Item Value
gene id G190795
gene name LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17528679 ~ 17642978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258712
TCtcaattcataaagtttttttattgtaataaaaatcGCACAAAACTGTACAGTTCTCTATATATGCAcaagttcatttaaaaaaaaatgtacattaaaaGCATACTGTGCTTCAAATAGCTTACAAACTACACTGTCTCTGtctaaaacagtaaacaaagaGCTGctcagcagctcaaaaagagataaagagagagagagagtgaggaaatgCTACAGGAGACGAGTGCGTCTCTCTCGCTGGCGAAGAGAACAGGCCTCACAGAGCCGACACCAACCGACCAATCACCTCACAGCTTTTAACTCATTTCCAGGACATTACAGCAACAACTCATGACGGGGGAAGGGAATGAGACTTTGAACCAAAAGCGGTATTTTTGGAACACCCTGCGTATTGCACAATAAGAGAGTTTTTAAGACGTTTGGCAGTATGTTCGGCTTTAAGGAGGTGGCGACACCATCGTTAAGGCAGCAGAAACTGAGGGCTGTGGGTGTTGCTATTGTTATTCTTCATACAAGGTCCCTACAAAACATCAACAGTTGGTCGTCATTGTGCACAATACATTTTAAGCGTGTAGTACCTAAGCTAGCACCTCTCACCAGGTCCTGATTGCATTTACATTCTTGTGAGAGCAGCACGTACACTTGTATTGTATTGCACCGCAACAATGCCAGCACCAGCATTCATGCTtcagttgagagagagagaggttacaTTTACACCTTAAAAACAGTCACAGTGTGTTGCCAGATTGTAATACAAGTACAGATACAGACTTAAACAGTGCAAGGAACCCACTCATGTGGaccattaatataatatataaagagaTATCCAAAACAAAATGACTTGGACCTCACTCAATAGGCAGTGCtttagttttcttttctttcttttggaaCTTAACTTTAAGATTTGGCTTCAAAATGAGAAGAAGTGAAATGTctagaaaagaataaaaatacaaaacaaaagccCCAGTCTGATGAAGGCCAGTCGATGTGAGCCCAGCTTCCAGCCCGTCTCCCCACTCTGCATCCTCGCTTTTTTAGCTGGACACGGTCATCAGGTAGTTCTTGGGTGGGCTTGTTCGGCCTCCCATCATGAAGCGGTTTTTGCAGTTCAGCGACTGGTGGTCGTATGGCGATGGCGAGGGAGCGGATGCTGGGGGCTCTGCCTCGGCCTCGTAGAGGACGCAAATGGACCCGTCCTCACCGATGCGGTAGGACACTTCGTATGGGTCCACCCATAGGGTCAGTTCACGGGGAAGGAGGGAAAAGAGTTGGGCACTGGTCAGTCCAATTCGGCAAGCTGCCTTGCCTATGAGAGGGTCCATCTCGTGGTTGATTCTGATGCAGCGGTAGCCGGAACCTTTCTGTGGCCTGTCAGGGAACCAATGGTGCTGGTAGTGCTCGGATAAAGATTGCTGTAGATAGTCTCTGAAAACTTGGAGCTGTTTTTCACTCAAAAAGCCCCTGGAACGAAGCAGCCTGGACACGAAACTGGCCGCAGCCGAGACCTCGGCCAGCATTTCTGCTCTAGATCCGCAGCCGTGGttcatttttctttaagttCCCAAATGTATTCAGCTAGAAAGCTACAAAAACAAGGCAGAAACCCTGGAATCCTGCCGTTTCCGCTTGCTTCGGCGTAAGGCGGGTTAAAAGATTAAAGCAGCAAGTTGAATCCGAGCATTCTTCTCAAGTGGAGCAACAAAAACCGTCCAAAAAATCGAAATAGTGCAAAATATTGTTCTCCTCCTGTTCCCTCTGAGCTTTTCCTgctcctct
>TU258714
TTCCTCACTATCTTTCCATTCTTTTTTACTTCTTAATGCTTTCTGTATACGTTTATCAATCACAGTTTGGGGGAACAATGGCTGAAGTACTTCTGTGTCTGCAAATCTTATAGCATGTAGCTACTTATAGCTACATGCTTAAAATCAACAATTAATTATATCACATTATCACTGTCAGACGGAGAAGTTCCTTTAACTTGCGTTGGAAGTCaatttaaagttgttttaatTGTGCATTTTCAAATACAGAAGTAGAAATCAGCCTTTAGTACAAATGAGGagcaaagaaaaacatgaaactgAACACTGAAGAAAAACCTAGGTGGAAAAATTGCATTTGGACGACAGATCTCATTAATTATGGTACACCACTTAATcgctgctgtccaatgaaaaacatgcatctcaATTTACCTTCTTTTTGTGTTTAGAAAATCACGAACTGACCAATATAAATGCTAGAATTACATGAAAAACTCCTTTCAAAAGGtaagaattttttttgtcttttcctgTAAAGTCAACATTTtggaaatacatgtttttcattacaTAGCTCTATCCgaacgggattagtttctcagtgtatttcactcttctactcagtgataaaactcctgcatctggactgtAATTCAAAAAataggaggaccagtgagtttttagggttttttttcagtcacatgacatcaagttcagtagctcctccatttccactcgctgttgtgttttttatgtggatctccatggaaacgcatgcccaaagtgtaattacaatgcgcggcagtggacaaatagctattttattaaacgtgaggagacgaaacttagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattgagcctgtaattttttatctcagaggacgtctgagaaaaacacgtacatgatcgttctggacggaaataaaatcacagaggataaaaacccccattaaagagaaaattaccccagaaccccctgagatactaatcctgtccggatagggctaatAAGACATCATGCTGGTCTGTTGTGTgttctgattttctgatttcTTGGATTGgtgtaaacagaaagaacagtgtgtagtgtgaacaggaACTCTTTTACTACTGTAGTTCATaactgtgtgtaaataaaaaggTGTTTTCACAGGCGACTGAAGCCAGTGAGAGCTAAAAGTTCCTCTTTTGGAGGGAGAAATGAGAaaaagaataaaaatacaaaacaaaagccCCAGTCTGATGAAGGCCAGTCGATGTGAGCCCAGCTTCCAGCCCGTCTCCCCACTCTGCATCCTCGCTTTTTTAGCTGGACACGGTCATCAGGTAGTTCTTGGGTGGGCTTGTTCGGCCTCCCATCATGAAGCGGTTTTTGCAGTTCAGCGACTGGTGGTCGTATGGCGATGGCGAGGGAGCGGATGCTGGGGGCTCTGCCTCGGCCTCGTAGAGGACGCAAATGGACCCGTCCTCACCGATGCGGTAGGACACTTCGTATGGGTCCACCCATAGGGTCAGTTCACGGGGAAGGAGGGAAAAGAGTTGGGCACTGGTCAGTCCAATTCGGCAAGCTGCCTTGCCTATGAGAGGGTCCATCTCGTGGTTGATTCTGATGCAGCGGTAGCCGGAACCTTTCTGTGGCCTGTCAGGGAACCAATGGTGCTGGTAGTGCTCTGTGAAAAAAGAAGGAAGGGAACAAACATTAGTAAAAATCATCaacattacataaaacaaacattacattaaatcaaACACTTTAGTTTTGTATATCGTTTGTTCATTTAAACtagttgtaaataaataaataaaacctaaaaaaggGTTGCTTAGCCTAGCTTACACTAAGCTAAAGGCCAGCTAACCCCAAGCGGATGGATGGATTGTATtcgcccctccccctccccctccttcCCCGAGCCGACGTCACAAACAACGCCAGGCCTAAAGCGAACATGGCTATTCATTCACAGCGtccacacaaagaaaacaatgcCTGTTGCAGCGCAAAAACTCGATTAAACCAGCATTTAAATCGTTTTAAAACAAGTTAAGTTGATACAAATCCAGTTTTCTCGTGTTAAACACGCGTTTAACTTGATTGAAAAAACAGCTAGATAAATTAGATAAGCCAAGTAATTAACTAAGCCATGTCTGGCCCAACCGCCTAACATATGCTTCCAACAAAACAGGCTCGCCATCGGTGTTTTAGTGAGCTTTAATGAGCTTAaagcttctcttttttttgtttttgaaagtcacacaaacaaaataaacagaatgtAGTTTGATGTTTACCGGATAAAGATTGCTGTAGATAGTCTCTGAAAACTTGGAGCTGTTTTTCACTCAAAAAGCCCCTGGAACGAAGCAGCCTGGACACGAAACTGGCCGCAGCCGAGACCTCGGCCAGCATTTCTGCTCTAGATCCGCAGCCGTGGttcatttttctttaagttCCCAAATGTATTCAGCTAGAAAGCTACAAAAACAAGGCAGAAACCCTGGAATCCTGCCGTTTCCGCTTGCTTCGGCGTAAGGCGGGTTAAAAGATTAAAGCAGCAAGTTGAATCCGAGCATTCTTCTCAAGTGGAGCAACAAAAACCGTCCAAAAAATCGAAATAGTGCAAAATATTGTTCTCCTCCTGTTCCCTCTGAGCTTTTCCTgctcctct
>TU258715
TCtcaattcataaagtttttttattgtaataaaaatcGCACAAAACTGTACAGTTCTCTATATATGCAcaagttcatttaaaaaaaaatgtacattaaaaGCATACTGTGCTTCAAATAGCTTACAAACTACACTGTCTCTGtctaaaacagtaaacaaagaGCTGctcagcagctcaaaaagagataaagagagagagagagtgaggaaatgCTACAGGAGACGAGTGCGTCTCTCTCGCTGGCGAAGAGAACAGGCCTCACAGAGCCGACACCAACCGACCAATCACCTCACAGCTTTTAACTCATTTCCAGGACATTACAGCAACAACTCATGACGGGGGAAGGGAATGAGACTTTGAACCAAAAGCGGTATTTTTGGAACACCCTGCGTATTGCACAATAAGAGAGTTTTTAAGACGTTTGGCAGTATGTTCGGCTTTAAGGAGGTGGCGACACCATCGTTAAGGCAGCAGAAACTGAGGGCTGTGGGTGTTGCTATTGTTATTCTTCATACAAGGTCCCTACAAAACATCAACAGTTGGTCGTCATTGTGCACAATACATTTTAAGCGTGTAGTACCTAAGCTAGCACCTCTCACCAGGTCCTGATTGCATTTACATTCTTGTGAGAGCAGCACGTACACTTGTATTGTATTGCACCGCAACAATGCCAGCACCAGCATTCATGCTtcagttgagagagagagagagagagagagagagagagagagcac

Function

NR:

description
protein BTG2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258712 False 1791 lncRNA 0.46 2 17584201 17586613
TU258714 True 2714 lncRNA 0.42 2 17584201 17642978
TU258715 False 735 lncRNA 0.43 2 17528679 17586613

Neighbor

gene id symbol gene type direction distance location
LOC111195393 NA coding downstream 35473 17483806 ~ 17493206 (-)
LOC103035164 NA coding downstream 50510 17468975 ~ 17478169 (-)
LOC103035479 LOC108416666,LOC108416668 coding downstream 70495 17452017 ~ 17458184 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding downstream 95905 17419052 ~ 17432774 (-)
LOC103036700 LOC108415149 coding downstream 172606 17343000 ~ 17356073 (-)
LOC103021559 LOC108415296 coding upstream 22139 17665117 ~ 17672273 (-)
elf3 elf3,ehf,LOC105900760 coding upstream 74921 17717899 ~ 17726253 (-)
LOC103032918 usp49 coding upstream 172231 17815209 ~ 17829572 (-)
med20 med20 coding upstream 187638 17830616 ~ 17837340 (-)
LOC103045494 LOC108415559 coding upstream 213303 17856281 ~ 17880950 (-)
G190810 NA non-coding downstream 15362 17425650 ~ 17513317 (-)
G190869 NA non-coding downstream 47964 17479558 ~ 17480715 (-)
G190813 NA non-coding downstream 111713 17415959 ~ 17416966 (-)
G190818 NA non-coding downstream 112944 17414507 ~ 17415735 (-)
G190816 NA non-coding downstream 228980 17298944 ~ 17299699 (-)
G190811 NA non-coding upstream 8586 17651564 ~ 17653882 (-)
G190887 NA non-coding upstream 21036 17664014 ~ 17701842 (-)
G190889 NA non-coding upstream 48068 17691046 ~ 17716832 (-)
G190891 LOC108412444 non-coding upstream 95536 17738514 ~ 17746733 (-)
G190896 srsf3,srsf3b,LOC107569752,LOC107690536,LOC108413700 non-coding upstream 112965 17755943 ~ 17764797 (-)
G190788 NA other downstream 308899 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 334932 17181114 ~ 17193747 (-)
cass4 NA other downstream 659218 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 929362 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1067751 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 496385 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 524262 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 668474 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1065341 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1254531 18897509 ~ 18902285 (-)

Expression


Co-expression Network