elf3 (elf3,ehf,LOC105900760)


Basic Information

Item Value
gene id elf3
gene name elf3,ehf,LOC105900760
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17717899 ~ 17726253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256710.3
CAGGTAAAGGCAGAGACtagacactcacactcacacacacacacacactctcgctcttacacacactcgcTGAGAGGTCTGCGCAGCGGCTCACACACACCTGAGTGGATTACTTGGCTACAACTTGACCTCTTGACCCTGAGTGGACCTGTACTTCTCACCTGCACCTATACCTGCACAGGCAGACAGATCTGCAATGGCTTCGAGTGAGCTGAGTCACATCCTCAACAACGCCAATGCTAACCTGTACCCATCCGAGTCCCAGCCCACACTCACCACTATGATGGTTTCCAGTATGATCCGCAGCCCCCATCTCCTGGACTTCTCCAGCAGCACAGCATCACATGGTCTTTGGCACCAGGTGAACCCACAGTACTGGACCAAGAGGAACGTCCTGGACTGGATCGAGTTCCACGTGGAGGACAGCAAATTTGACGCCAGGTTGCTGAACATGGAGTTCTGCAACATGGATGGAACCGTGCTGTGCCAGCTCAGCCGAGAAACCATGACCGGCATGTTTGGCCTGGGGTTCGGAGAGCGTCTCTACCAGAGCCTGGAAGTGCTCAAAGCCAGACATGTGGACGATCTCACGCAGAACTGCACTCTGAATGAGACCTACGAGCTTCTGGACGACTTCCTGCTGGGGTTTCCTCAGGGTCTCGGTCTGCTGGACACCGTGGTCGTTAATAATGCACCCATAGATAAGAAGGAGACTCCAGACTTCGGCTACTACAGCGACTACAAGACCCAGCTGACGCCGGGCAGCGACAACGGCTACGACTCTTATTCCGAGAGTCTCCAGAGCTCCACCacagGCAGTTTTCTGAACCCGAGTTCTCCAGAATCCACCATGAGCGACTCTGATCCAGAGTATTACCCCATCCCATCAAAGAGCTTTATAAAGCAGGAGCCTTtggagaggaagaagagaggAAGGCCTCCTAAACTCAGCCGCGGCTCCGAACACTTTGTGGAGaccaagaaaaacaaacactCTCCTCGCGGTACACACCTGTGGGAATTCATCCGGGACATCCTGATCCACCCGGAGAAGAACCAGGGCCTGATGAAGTGGGAGGACCGCAGAGACGGCATCTTCAAGTTCCTGAAGTCGGAGGCGGTGGCTCAGCTCTggggccagaagaagaagaacagcaGCATGACGTACGAGAAGCTCAGCAGAGCCATGAGGTACTACTATAAAAGAGAAATCCTGGAACGTGTGGACGGACGAAGACTCGTCTACAAGTTCGGGAAGAACTCGAGCGGCTGGAAGCCGGAGGAGGTCGGGATGTGAAGGGGAGGTGATGGAGGGATTCAGGAGGAAACTGACGGAGGAAGAGCTGCAGATTCGGACGGACAGAACGCTCCCTCTCGCACTTGAACGTAAAAGCTGGAGACTCCTACCATGAAGGACATTAAAGCTGAGACGGCGTTCTAGTCTGAAggactttttctttttgtacagAGACAGAAACTTCCCGAATGTGGGgaagagagacatacagacaaACTGTAAGCCACGTTTGGCTAAAGTAGGTTTTATGAaccaataataatgttaataatattaattataatattactcTTATGgtgtaattcttttttttatttctgactGGCTCTTTTCTCTCTGGTCCATTTGGCACGCTGGCGTGACCCAAACCAAAAGTCTCCAGTTCTGGATAGAGGTGTGGATTTATACCAAAATACCGCGAATACGATTTATGTTTACTGAAAGTAAGCGACCGTTTCGGAAACGGACGTATTCTGAGATCTTCTGAGATCCTGCACCGCTCCAGAGTAACTTCAGAAACTTCAGAGACTTCAGACTTTAGAGGTTGATGTATAAAATTGTCTTTTTAAAGTTGTCGTCGTTttgttgaatttttattttacgaAATTTGACCACACTGCTGTAATTCATATCGCACTTCGTCTTGATTTTGATTCTCATTTTTCCTTATGGGGTTCCACAGGGTTCTGTGTTAGGTCCTTTGCTGTTTTCTTAGTACATCTTATTATGAGTCTTTGTACGGTACATGTTACAATCCTTAACAGGGGATTTTTTTGAGGGTTTTTTAgtaaagacaagacaagaaagacaagaaactcactcctgttactttttatgtttagagtaacaggaaaaaaaagtaacaggaattagcaaaaacatgaaaaatatctacatggcggctatgctaatagcttgaggacactgagcacattatagttattttcccaaaatttgtattttaagatctaagaattaatatacagaaaaactaatgaagAAAAGGATTTTCTAAAACTCATTGCAGTTCAAAATCCTGTTacagtaccacagcaaccccctcAGAACCCCAAAAGGAACAAGCTCTGCTCTGATGAGGATTTTACGAAATTAAAGTAAAACTCTCAGCTTTACTCATTATACACACTTACTTTTATACAGAACACTCTTTTATTAATGAACGAGGTTATTCAGCGTATTCTCTGCTCTGCCTTGGTGTCAACAATCAgttgaaaaaaaatctggattattatttgtattattttgtgtgtgtgggggggtttaATTCTGTGTTATTCTGTTCAGCTGGACTGTGATTTAAGCACAAATTCTGTATGAGAATTTCTTCTCAAATCGTATCACTAAAGAGACATTTATTACTATGTACAacatattgtgtgtttttttaaagaagaatttTCTATAAAATAAAGTTCTTGATATcata

Function

symbol description
elf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including inflammatory response; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in post-vent region. Orthologous to human ELF3 (E74 like ETS transcription factor 3).
ehf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial cell proliferation; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in liver. Orthologous to human EHF (ETS homologous factor).

NR:

description
ETS-related transcription factor Elf-3-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09429 K09429, ELF3; E74-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256710.3 True 2744 mRNA 0.45 9 17717899 17726253

Neighbor

gene id symbol gene type direction distance location
LOC103021559 LOC108415296 coding downstream 45626 17665117 ~ 17672273 (-)
c22h6orf89 cunh6orf89 coding downstream 90500 17621467 ~ 17627399 (-)
znf76 znf76 coding downstream 97963 17608791 ~ 17619936 (-)
LOC103024167 NA coding downstream 143242 17554248 ~ 17574657 (-)
LOC103034515 LOC108413010 coding downstream 182110 17516888 ~ 17535789 (-)
LOC103032918 usp49 coding upstream 88956 17815209 ~ 17829572 (-)
med20 med20 coding upstream 104363 17830616 ~ 17837340 (-)
LOC103045494 LOC108415559 coding upstream 130028 17856281 ~ 17880950 (-)
LOC103032297 celsr2 coding upstream 207340 17933593 ~ 18019678 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding upstream 296205 18022458 ~ 18041503 (-)
G190889 NA non-coding downstream 1067 17691046 ~ 17716832 (-)
G190887 NA non-coding downstream 16057 17664014 ~ 17701842 (-)
G190811 NA non-coding downstream 64017 17651564 ~ 17653882 (-)
G190795 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 non-coding downstream 74921 17528679 ~ 17642978 (-)
G190804 NA non-coding downstream 122203 17514474 ~ 17595696 (-)
G190891 LOC108412444 non-coding upstream 12261 17738514 ~ 17746733 (-)
G190896 srsf3,srsf3b,LOC107569752,LOC107690536,LOC108413700 non-coding upstream 29690 17755943 ~ 17764797 (-)
G190908 bysl,LOC107572361,LOC107723053,LOC107569751 non-coding upstream 115261 17841514 ~ 17847317 (-)
G190924 NA non-coding upstream 187120 17913373 ~ 17914407 (-)
G190927 NA non-coding upstream 197430 17923683 ~ 17928468 (-)
G190788 NA other downstream 498119 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 524152 17181114 ~ 17193747 (-)
cass4 NA other downstream 848438 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1118582 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1256971 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 413110 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 440987 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 585199 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 982066 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1171256 18897509 ~ 18902285 (-)

Expression


Co-expression Network