G193962


Basic Information

Item Value
gene id G193962
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31148645 ~ 31151242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263196
gagagagagaaagagacagtgaaAGACACAGACAGAAGAAATAAggggagggagcgagagagagaggagaaagaaagagtgaatgagaagaaaaagggggagagaaagaaagagacagataaaggAGAAATAAggggagataaagagagagaagagaaaaggagagagagagaaagagagagaaagaaagaaacagagagagacgcagagagaagaaataaggggtgggagtgagagagagagaagagagagagagagaaaaaaaggagagagagtggagagaaaGAATATATACTAttctaatataataaatatactacAGCAAGTAACACTCACAAACCATTATAGTACTTTTGCAGGATCTAAACATATTATATGTGGGGATTCTCTAACAGTAACCATAGCAATTtataaccatttttttattaatactattattCTATTATACTACTAGTATAATACTATACATACATCCGCCCGCCTCTATGGTAAGTACAAACTCTTTTGCAGCCTTCACATTCTCTGGCGTTGCTTTGCTCAGTGATGGTCTCCAAGGGCTAACGGTAGAGTCAAAAGGGACCAGTCCAAAATGGTCTTCCTCGTTCAAGTCCGTAAGTATGGTTACAAGTGCTTTGCGAGTCTGATCCATTTTTATGTTATACATGGATCCACTCCTGTCAATCACAAATACTACGTTCTTTGGTAATCGTGGTAAATCAGCTGGTGCGAAGAAATGTACAAAGTACCCGTTCACGATCTGAATGTCGCCAATGTCCTGCACACGATTGACATCATATTTAATGACGAAATCTCCATCTATCAGTGTACCACCAC
>TU263197
atgagaaaaaaatgagtgaagagacagagtgaggagAAATAAggggagataaagagagagaagaaaaaagggtAGATAGATATGagaaaaagggggagagagaaagagacagataaaggAGAAATAAGGGGAgataaagagaggagagaaaaggagagagagagagacagacagaagaaaAAAGGGTAGATAgatatgagaaaaaaatgagtgaagagacagagtgaggagAAATAAggggagataaagagagagaagaaaaaaggagagagagagaaagaaagaaaaagagaaataaagagacagagagagacagacagaagaaaaaaggggagggagcgagagagagaggagaaagaaagagttaaTGAGAAGAAaaaggggggagagagagatatgagaaaaagggggggagagagaaagagacagagaggagaaataaggggagataaagagaggagagaaaaggagagagagagagaaagagagagagaaagagacagtgaaAGACACAGACAGAAGAAATaaggggaggaagagagagagagaaagaaagagtgaatgagaagaaaaagggggagagaaagaaagagacagataaaggAGAAATAAggggagataaagagagagaagagaaaaggagagagagagaaagagagagaaagaaagaaacagagagagacgcagagagaagaaataaggggtgggagtgagagagagagaagagagagagagagaaaaaaaggagagagagtggagagaaaGAATATATACTAttctaatataataaatatactacAGCAAGTAACACTCACAAACCATTATAGTACTTTTGCAGGATCTAAACATATTATATGTGGGGATTCTCTAACAGTAACCATAGCAATTtataaccatttttttattaatactattattCTATTATACTACTAGTATAATACTATACATACATCCGCCCGCCTCTATGGTAAGTACAAACTCTTTTGCAGCCTTCACATTCTCTGGCGTTGCTTTGCTCAGTGATGGTCTCCAAGGGCTAACGGTAGAGTCAAAAGGGACCAGTCCAAAATGGTCTTCCTCGTTCAAGTCCGTAAGTATGGTTACAAGTGCTTTGCGAGTCTGATCCATTTTTATGTTATACATGGATCCACTCCTGTCAATCACAAATACTACGTTCTTTGGTAATCGTGGTAAATCAGCTGGTGCGAAGAAATGTACAAAGTACCCGTTCACGATCTGAATGTCGCCAATGTCCTGCACACGATTGACATCATATTTAATGACGAAATCTCCATCTATCAGTGTACCACCAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU263196 False 834 lncRNA 0.39 4 31148645 31150896
TU263197 True 1313 lncRNA 0.39 4 31148645 31151242

Neighbor

gene id symbol gene type direction distance location
gnl3 NA coding downstream 292096 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 346137 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 428400 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1389020 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1857042 29280150 ~ 29291603 (-)
sfmbt1 sfmbt1 coding upstream 44580 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 87229 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 154325 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 279649 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 588629 31739871 ~ 31747170 (-)
G193961 itih3a,itih3,LOC108435863,LOC108435869 non-coding downstream 2708 31144331 ~ 31145937 (-)
G193891 NA non-coding downstream 129419 31018747 ~ 31019226 (-)
G193889 NA non-coding downstream 137102 31011287 ~ 31011543 (-)
G193886 NA non-coding downstream 165283 30968319 ~ 30983362 (-)
G193866 NA non-coding downstream 236905 30893627 ~ 30911740 (-)
G193964 NA non-coding upstream 42922 31194164 ~ 31194838 (-)
G193968 NA non-coding upstream 150238 31301480 ~ 31304310 (-)
G193978 NA non-coding upstream 260677 31411919 ~ 31414467 (-)
G193980 NA non-coding upstream 266507 31417749 ~ 31418526 (-)
G194034 NA non-coding upstream 344760 31496002 ~ 31497236 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 317688 30809794 ~ 30830957 (-)
G193737 NA other downstream 968519 30165761 ~ 30180126 (-)
G193541 NA other downstream 2550007 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2562423 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2935575 28194379 ~ 28213070 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 19056 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 23565 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 299561 31450803 ~ 31654210 (-)

Expression


Co-expression Network