LOC103036366 (prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299)


Basic Information

Item Value
gene id LOC103036366
gene name prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31238471 ~ 31287104 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682788.1
cacaaacacactgacacacttcCTCAAGCAAGCTCTCAGTCCGTGTGCTctgctctcaacacacacactctaacacacacacttacactgctaaacccaagaaaaaggaGTTTTCGGAGTCTCTGAAAAGcaggTGAGAGTTCACCATGGCTCCGTTCCTGCGGATCGCCTTTAATGACTTTAATTTGGGGAACCTCCCTCCTCTGACTGATCAGCCCTTCTGTGCCATCAAGATGAAGGAGTCTCTCAGCACAGAGCGAGGAAAGACCCTGGTCCAGAGGAAGCCCACCATGTACCCGGCCTGGAAGTCCAGCTTTGATGCTCATATCTACGAGGGCCGTGTGATCCAGGTTCTCCTGATGAAAACCGCTGAGGAGACTCTCTCGGAAGCAACGGTGGGCGTGTCCGTCATCGCCGAGCGCTGCAAAAAGGGAAACGGCCGTGCAGAATTCTGGGTAGACCTGCAGCCCTCTGGGAAGGTGATGATGTCGGTGCAGTTTTTTGTGGAGGATACAGACACAGaaaGCAGACCTTCAGTGcgggagaaggaggaggatggAATCTTAACTCTAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTCATCAAGAACCATGAGTTCACCGCCACCTTCTTCAAACAGCCCACCTTCTGCTCCGTCTGCAGAGAGTTCGTCTGGGGTCTTAACAAACAGGGCTACAAATGCAGACAATGCAATGCGGCCATTCACAAAAAGTGCATTGATAAGATCATTGGAAGATGCACAGGAACTGCAGCCAACAGCCGAGATACTGTGTTCCAGAAAGAACGCTTCAAGATCGACATGCCGCATCGCTTCAAGACGCACAACTACATGAGCCCCACCTTCTGCGACCACTGCGGGAGCCTGCTGTGGGGAATGGTCAAGCAAGGCCTGAAATGTGAAGATTGTGCTATGAACGTCCATCACAAATGCCAGACTAAAGTAGCCAACCTCTGCGGAATAAACCAGAAGCTTCTAGCTGAGGCTCTGACTCAAGTTAGCCTGAAATCATCTACCAAGAGGCCTGATCCCACTCTGTCAGACATTGGCATCTATCAGGATATAGCCAAAAACACTCCAGCAGACCCTAGTGCAGATAGCAATCAGTATGGGAAGCTATGGGATGGCAGTACCCCAACGCCCCCTGCTGCACCCTCCGCCTCAATCACACATCAAACGCGCATCAACTTCGAGAACTTTGTGTTCCATAAGGTTCTGGGCAAAGGCAGCTTTGGCAAGGTGCTGCTGGCTGAGCTGAAAGGGCGTGGCGAGTACTTTGCAGTGAAGGCTCTGAAGAAGGACGTGGTGCTGATGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTTCTGTCATTAGCCTGGGAAAATCCTTTCCTCACACACCTTTACTGCACCTTCCAGAGCAAGgagCACTTGTTTTTCGTGATGGAGTATCTGAATGGAGGAGATCTGATGTTTCACATTCAGGATAAGGGGCGTTTTGATCTTTTTAGAGCCACGTTCTATTCAGCGGAAATTATCTGCGGCCTGCAGTTCCTCCATTCCAAAGGCGTTATTTACAGAGACTTGAAGCTGGACAATGTGATGCTGGATAAAGACGGCCACATTAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGATTGGAGAGAACCGAGCCACGACTTTCTGTGGAACTCCTGATTACATTGCGCCAGAGATCCTACTCGGCCAGAAATACACATTCTCGGTGGACTGGTGGTCGTTTGGAGTTCTGGTTTATGAGATGTTGATCGGTCAGTCGCCGTTCCAAGGCGATGATGAGGATGAGCTGTTTGAGTCGATCAGAATGGACGTCCCGCACTATCCCCGCTGGATCACCAAGGAGTCCAAAGACCTGCTGGAGAAGTTATTTGAGCGAGATCCGACCCGTCGGCTTGGCGTCGTGGGGAACATCCGAGGACACTCCTTCTTCAAGACCATCAACTGGCCGGCTCTCGAGAAGAGAGAGGTGCCTCCCCCCTTCAAGCCAAAAGTGAAATCCCCCAACGACTGCAGCAACTTCGACCGCGAGTTCCTCAGCGAGAAGCCCCGCCTCTCACACGCCGACAAGAACCTGATCGACTCAATGGACCAGACGGCCTTCTCCGGCTTCTCCTTCATCAACCCCTCCATGGATACCATGCTCGAGAAGTGAAGCGGACCCCCTCCAGCACTGTGACCAAGCCTCCACCCCCCCAAAGCCCCTGAACCCCCTCCGCACCATTCCAACCAGCCAGGCAGTGTGGGGGAAACCAGTATCCAGGCAATACTCCAGCATTGTTTAACCGCTAACCTCTTAATCTCTATCTGtaggaaccaaaaaaaaatgtcgCTGTCACGCAAAGAAACCTTGCATCTCCAATACAATAGCTGACACATTTTCaaaggaagtcaatgtaaaaagtaacattttatCGTGAAATATTGCTACAatttaaagaacaactgccaaattacattcaaatcatgccaaataaaaaactgtgaaaactaagtaacatttacagtattt
>XM_022682789.1
cacaaacacactgacacacttcCTCAAGCAAGCTCTCAGTCCGTGTGCTctgctctcaacacacacactctaacacacacacttacactgctaaacccaagaaaaaggaGTTTTCGGAGTCTCTGAAAAGgTGAGAGTTCACCATGGCTCCGTTCCTGCGGATCGCCTTTAATGACTTTAATTTGGGGAACCTCCCTCCTCTGACTGATCAGCCCTTCTGTGCCATCAAGATGAAGGAGTCTCTCAGCACAGAGCGAGGAAAGACCCTGGTCCAGAGGAAGCCCACCATGTACCCGGCCTGGAAGTCCAGCTTTGATGCTCATATCTACGAGGGCCGTGTGATCCAGGTTCTCCTGATGAAAACCGCTGAGGAGACTCTCTCGGAAGCAACGGTGGGCGTGTCCGTCATCGCCGAGCGCTGCAAAAAGGGAAACGGCCGTGCAGAATTCTGGGTAGACCTGCAGCCCTCTGGGAAGGTGATGATGTCGGTGCAGTTTTTTGTGGAGGATACAGACACAGaaaGCAGACCTTCAGTGcgggagaaggaggaggatggAATCTTAACTCTAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTCATCAAGAACCATGAGTTCACCGCCACCTTCTTCAAACAGCCCACCTTCTGCTCCGTCTGCAGAGAGTTCGTCTGGGGTCTTAACAAACAGGGCTACAAATGCAGACAATGCAATGCGGCCATTCACAAAAAGTGCATTGATAAGATCATTGGAAGATGCACAGGAACTGCAGCCAACAGCCGAGATACTGTGTTCCAGAAAGAACGCTTCAAGATCGACATGCCGCATCGCTTCAAGACGCACAACTACATGAGCCCCACCTTCTGCGACCACTGCGGGAGCCTGCTGTGGGGAATGGTCAAGCAAGGCCTGAAATGTGAAGATTGTGCTATGAACGTCCATCACAAATGCCAGACTAAAGTAGCCAACCTCTGCGGAATAAACCAGAAGCTTCTAGCTGAGGCTCTGACTCAAGTTAGCCTGAAATCATCTACCAAGAGGCCTGATCCCACTCTGTCAGACATTGGCATCTATCAGGATATAGCCAAAAACACTCCAGCAGACCCTAGTGCAGATAGCAATCAGTATGGGAAGCTATGGGATGGCAGTACCCCAACGCCCCCTGCTGCACCCTCCGCCTCAATCACACATCAAACGCGCATCAACTTCGAGAACTTTGTGTTCCATAAGGTTCTGGGCAAAGGCAGCTTTGGCAAGGTGCTGCTGGCTGAGCTGAAAGGGCGTGGCGAGTACTTTGCAGTGAAGGCTCTGAAGAAGGACGTGGTGCTGATGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTTCTGTCATTAGCCTGGGAAAATCCTTTCCTCACACACCTTTACTGCACCTTCCAGAGCAAGgagCACTTGTTTTTCGTGATGGAGTATCTGAATGGAGGAGATCTGATGTTTCACATTCAGGATAAGGGGCGTTTTGATCTTTTTAGAGCCACGTTCTATTCAGCGGAAATTATCTGCGGCCTGCAGTTCCTCCATTCCAAAGGCGTTATTTACAGAGACTTGAAGCTGGACAATGTGATGCTGGATAAAGACGGCCACATTAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGATTGGAGAGAACCGAGCCACGACTTTCTGTGGAACTCCTGATTACATTGCGCCAGAGATCCTACTCGGCCAGAAATACACATTCTCGGTGGACTGGTGGTCGTTTGGAGTTCTGGTTTATGAGATGTTGATCGGTCAGTCGCCGTTCCAAGGCGATGATGAGGATGAGCTGTTTGAGTCGATCAGAATGGACGTCCCGCACTATCCCCGCTGGATCACCAAGGAGTCCAAAGACCTGCTGGAGAAGTTATTTGAGCGAGATCCGACCCGTCGGCTTGGCGTCGTGGGGAACATCCGAGGACACTCCTTCTTCAAGACCATCAACTGGCCGGCTCTCGAGAAGAGAGAGGTGCCTCCCCCCTTCAAGCCAAAAGTGAAATCCCCCAACGACTGCAGCAACTTCGACCGCGAGTTCCTCAGCGAGAAGCCCCGCCTCTCACACGCCGACAAGAACCTGATCGACTCAATGGACCAGACGGCCTTCTCCGGCTTCTCCTTCATCAACCCCTCCATGGATACCATGCTCGAGAAGTGA
>XM_022682790.1
cacaaacacactgacacacttcCTCAAGCAAGCTCTCAGTCCGTGTGCTctgctctcaacacacacactctaacacacacacttacactgctaaacccaagaaaaaggaGTTTTCGGAGTCTCTGAAAAGcaggTGAGAGTTCACCATGGCTCCGTTCCTGCGGATCGCCTTTAATGACTTTAATTTGGGGAACCTCCCTCCTCTGACTGATCAGCCCTTCTGTGCCATCAAGATGAAGGAGTCTCTCAGCACAGAGCGAGGAAAGACCCTGGTCCAGAGGAAGCCCACCATGTACCCGGCCTGGAAGTCCAGCTTTGATGCTCATATCTACGAGGGCCGTGTGATCCAGGTTCTCCTGATGAAAACCGCTGAGGAGACTCTCTCGGAAGCAACGGTGGGCGTGTCCGTCATCGCCGAGCGCTGCAAAAAGGGAAACGGCCGTGCAGAATTCTGGGTAGACCTGCAGCCCTCTGGGAAGGTGATGATGTCGGTGCAGTTTTTTGTGGAGGATACAGACACAGaaaGCAGACCTTCAGTGcgggagaaggaggaggatggAATCTTAACTCTAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTCATCAAGAACCATGAGTTCACCGCCACCTTCTTCAAACAGCCCACCTTCTGCTCCGTCTGCAGAGAGTTCGTCTGGGGTCTTAACAAACAGGGCTACAAATGCAGACAATGCAATGCGGCCATTCACAAAAAGTGCATTGATAAGATCATTGGAAGATGCACAGGAACTGCAGCCAACAGCCGAGATACTGTGTTCCAGAAAGAACGCTTCAAGATCGACATGCCGCATCGCTTCAAGACGCACAACTACATGAGCCCCACCTTCTGCGACCACTGCGGGAGCCTGCTGTGGGGAATGGTCAAGCAAGGCCTGAAATGTGAAGATTGTGCTATGAACGTCCATCACAAATGCCAGACTAAAGTAGCCAACCTCTGCGGAATAAACCAGAAGCTTCTAGCTGAGGCTCTGACTCAAGTTAGCCTGAAATCATCTACCAAGAGGCCTGATCCCACTCTGTCAGACATTGGCATCTATCAGGATATAGCCAAAAACACTCCAGCAGACCCTAGTGATAGCAATCAGTATGGGAAGCTATGGGATGGCAGTACCCCAACGCCCCCTGCTGCACCCTCCGCCTCAATCACACATCAAACGCGCATCAACTTCGAGAACTTTGTGTTCCATAAGGTTCTGGGCAAAGGCAGCTTTGGCAAGGTGCTGCTGGCTGAGCTGAAAGGGCGTGGCGAGTACTTTGCAGTGAAGGCTCTGAAGAAGGACGTGGTGCTGATGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTTCTGTCATTAGCCTGGGAAAATCCTTTCCTCACACACCTTTACTGCACCTTCCAGAGCAAGgagCACTTGTTTTTCGTGATGGAGTATCTGAATGGAGGAGATCTGATGTTTCACATTCAGGATAAGGGGCGTTTTGATCTTTTTAGAGCCACGTTCTATTCAGCGGAAATTATCTGCGGCCTGCAGTTCCTCCATTCCAAAGGCGTTATTTACAGAGACTTGAAGCTGGACAATGTGATGCTGGATAAAGACGGCCACATTAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGATTGGAGAGAACCGAGCCACGACTTTCTGTGGAACTCCTGATTACATTGCGCCAGAGATCCTACTCGGCCAGAAATACACATTCTCGGTGGACTGGTGGTCGTTTGGAGTTCTGGTTTATGAGATGTTGATCGGTCAGTCGCCGTTCCAAGGCGATGATGAGGATGAGCTGTTTGAGTCGATCAGAATGGACGTCCCGCACTATCCCCGCTGGATCACCAAGGAGTCCAAAGACCTGCTGGAGAAGTTATTTGAGCGAGATCCGACCCGTCGGCTTGGCGTCGTGGGGAACATCCGAGGACACTCCTTCTTCAAGACCATCAACTGGCCGGCTCTCGAGAAGAGAGAGGTGCCTCCCCCCTTCAAGCCAAAAGTGAAATCCCCCAACGACTGCAGCAACTTCGACCGCGAGTTCCTCAGCGAGAAGCCCCGCCTCTCACACGCCGACAAGAACCTGATCGACTCAATGGACCAGACGGCCTTCTCCGGCTTCTCCTTCATCAACCCCTCCATGGATACCATGCTCGAGAAGTGA

Function

symbol description
prkcdb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within apoptotic process and protein phosphorylation. Predicted to be located in nucleus and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autoimmune lymphoproliferative syndrome type 3; fatty liver disease; and hypertension. Orthologous to human PRKCD (protein kinase C delta).
prkcd Enables enzyme activator activity; protein kinase binding activity; and protein serine/threonine kinase activity. Involved in several processes, including cellular response to oxidative stress; positive regulation of cellular metabolic process; and protein phosphorylation. Located in several cellular components, including cytosol; endolysosome; and endoplasmic reticulum. Implicated in autoimmune lymphoproliferative syndrome type 3 and fatty liver disease. Biomarker of hypertension and portal hypertension.

NR:

description
PREDICTED: protein kinase C delta type-like isoform X1

GO: NA

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682788.1 True 2573 mRNA 0.50 17 31238471 31287104
XM_022682789.1 False 2213 mRNA 0.51 17 31238828 31287104
XM_022682790.1 False 2213 mRNA 0.51 17 31238828 31287104

Neighbor

gene id symbol gene type direction distance location
sfmbt1 sfmbt1 coding downstream 7642 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 381922 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 435963 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 518226 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1478846 29302534 ~ 29759625 (-)
LOC103035852 LOC108435806 coding upstream 18463 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 143787 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 452767 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 491253 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 554004 31841108 ~ 31844991 (-)
G193964 NA non-coding downstream 43633 31194164 ~ 31194838 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding downstream 69588 31137974 ~ 31168883 (-)
G193962 NA non-coding downstream 87229 31148645 ~ 31151242 (-)
G193961 itih3a,itih3,LOC108435863,LOC108435869 non-coding downstream 92534 31144331 ~ 31145937 (-)
G193891 NA non-coding downstream 219245 31018747 ~ 31019226 (-)
G193968 NA non-coding upstream 14376 31301480 ~ 31304310 (-)
G193978 NA non-coding upstream 124815 31411919 ~ 31414467 (-)
G193980 NA non-coding upstream 130645 31417749 ~ 31418526 (-)
G194034 NA non-coding upstream 208898 31496002 ~ 31497236 (-)
G194038 NA non-coding upstream 235638 31522742 ~ 31523803 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 44422 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 63593 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 407514 30809794 ~ 30830957 (-)
G193737 NA other downstream 1058345 30165761 ~ 30180126 (-)
G193541 NA other downstream 2639833 28597555 ~ 28598638 (-)
cadps cadps,LOC107549847 other upstream 163699 31450803 ~ 31654210 (-)

Expression


Co-expression Network