G193959 (itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262)


Basic Information

Item Value
gene id G193959
gene name itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31137974 ~ 31168883 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263189
aatcaCTCTAGAGAAGatgaaaattatatttaattcattttaatccaTTCATAATTCTGAACGTCATATTCTGGTATTCAGGTTATTGGACCATGATTAATTATGCATGTCAGTTTGACTTGAAATTGGTCTTAAAGAGACCAGAGACGATGTAGTCGCTGAGCTCTCCATCAATGATTCCAGTTCCGTTATTATGAATAAACCAGCAGGGCACATTTTCTCCATTCTTCACGTCTTTTCTGAAGTCTCTCTGCCAGCCCCTGGTGACTACAAGCTGGTGTCCTTTCACAAACATAATGGCGTCAGGTTTCTCCTCATTCTCCCCAGGAAAGAGTTCACTCACCTCGAATTGGACACCATTATAGAATTGTcCGAGCAGACCGTGGACTTTTGGTGAGAAAAGGTGGCTGTCCAGGGTGTAGAAGCCCAGGTAGTCCTGGTGGTAGGGATGCTTCTTCCACACTTTGTGTAGGATGATCACAAACTTCACTGAGTTTTCAGAGTCACGGTCAGACTGCGATCTTTGGATACATGCAACCCCATACTGTAACAAggcaaaatagaaaatatagtgTTC

Function

symbol description
itih3 Predicted to enable endopeptidase inhibitor activity. Predicted to be involved in hyaluronan metabolic process and negative regulation of endopeptidase activity. Located in extracellular exosome.

NR:

description
PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263189 True 577 lncRNA 0.42 4 31137974 31168883

Neighbor

gene id symbol gene type direction distance location
gnl3 NA coding downstream 281425 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 335466 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 417729 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1378349 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1846371 29280150 ~ 29291603 (-)
sfmbt1 sfmbt1 coding upstream 26939 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 69588 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 136684 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 262008 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 570988 31739871 ~ 31747170 (-)
G193891 NA non-coding downstream 118748 31018747 ~ 31019226 (-)
G193889 NA non-coding downstream 126431 31011287 ~ 31011543 (-)
G193886 NA non-coding downstream 154612 30968319 ~ 30983362 (-)
G193866 NA non-coding downstream 226234 30893627 ~ 30911740 (-)
G193846 NA non-coding downstream 292018 30844055 ~ 30845956 (-)
G193964 NA non-coding upstream 25281 31194164 ~ 31194838 (-)
G193968 NA non-coding upstream 132597 31301480 ~ 31304310 (-)
G193978 NA non-coding upstream 243036 31411919 ~ 31414467 (-)
G193980 NA non-coding upstream 248866 31417749 ~ 31418526 (-)
G194034 NA non-coding upstream 327119 31496002 ~ 31497236 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 307017 30809794 ~ 30830957 (-)
G193737 NA other downstream 957848 30165761 ~ 30180126 (-)
G193541 NA other downstream 2539336 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2551752 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2924904 28194379 ~ 28213070 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1415 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 5924 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 281920 31450803 ~ 31654210 (-)

Expression


Co-expression Network