G193846


Basic Information

Item Value
gene id G193846
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 30844055 ~ 30845956 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263053
GTAACAACTGCTTCCCTATATACATGTACATCCCTTTACACTCTTAAAATCATACTGAGGGAAGCCATAGCATATGGGATCAAATGCAGCTCAtgctttcattttattcaaagaaacaaacaaaaacacaaaatacatgcATGCTTTAACTGTTTATACTACACGGTAATGAAACAAATTAGAAAACAATATGAAAACAAGCTTACATCAGACACAAAACATGTTGGCAGTGGTTCTGTTCCATGCTTGGAAAGCCACAAAAAAGGCAGTCAATGGTTAGTGTTGTAACTGTAACAGAATAAAGTACCTGTAGAAGCAATGTAgtgagtttatatatatatatataaaaaaaaaacacaaccttATGAAAAGATGAAATTTGGGACCGTTCCTATTATTATAGTTCACCATACTGCACACTGTTAAGGGCTGAGGTAGTAGCGCATTTTAGTGGATTCTGTCACAAGAAGATCTCTAGGTCAATTCTCTCCTGAACATGTAACAGACAGCTAGTGTACAAacaattaagataaaaaaaataggactGACATGGTTAGAAAAACAATGCGTGTGTTTACTAGCACTCAAAAATCCATtcataatcagattactgcaATTATCTAATTTCTTAGATCAGAATAAGGCCTAAACCATCTTTTATTTAGCTGATTTCTCAGTCTGTGCATAAGTGAAAACAGACCCGTTTtagtagaaataaaaaaggcagTGTTTAACACAGCTAAAACAAAATGCTGaccaaacaatttttttttggagcGACACTGGAACCGaagaatttaaataatattcatcttctagctgccggagtcctgagagagcacaattggccttgctctccctgggtgggtagatggcgctcttgcccctcatcactccaaaagggtgatgtcgatcagcacagggcgtctgtgagctgatgtatcagaacagagtcgctgcttTTTGATTTGCAAccatcaaataaacaaaacaggatGCCTTGTCATGCTTTTTTATGAATGTAAATCAGCTAAAATCCTTCAGACTGGCGTCACAGTCAGTTTCTGTGCATGAGTTCACAAGCACTGAGAAATCAAATTTCTAAAGATACAATCCAGCTCTATCAGATTTTTAACTGGATTTATTTTGGATTAAGCTGATCTAAGAAATCAaagtatgctgtttacatgaGAAAACTGTTCATAAATCATCATTATGATGTGATTATGAAGTGCATATGATTGTGGTTAGCTAGTAATCCTTGGGTAATTGGATCCTggtaaaactttaatttaaatgagtttaCTTGAGTCTACAGCCAATAAACTCGTGGCCAAACTTTGTTTAACAAAACAGGCAACAACATGAACGTGATTATTTAAATGCTTCAGTTTCATCTCTGCTATGATTACTTAATCAGATTTCTTAATCAGACTTGAGTATTCTGTTTATATTGCAGATTATGAACTGATTTTTGGCTGGTGTAAATGCACTCAATATTCAACGCTGGTTCCTAAAGTTAATGCCAACCAAAACATACATCACTAGAGAGAAGGGGCAGCAGCAGTGTTGCCCTATTCCTAGTTTTGTCTTATGtggcaaaaatacaaaatacaagggCTAAATCTTCTGATGCAACAAAGTAGTGTATCCTAGTGAGCAGGAATGATAGTGCAAAAGTGTCCGGGTAATCAAATCCAAGCTCATTCGTCCCCTGAGTGTCTTCTAATTGGATGGAATTTCCCAGTGGGATCTGGAATGTACCACTTGTCCCAAATCTCAGAGAAGGAGGAGGTTCTGCCCCAGGGTTTATAATGTCCGTTCCAGTGCAGTAGTTTGGCAGCTTTGACGAACTGTGTTGAGTAGCGATTTCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263053 True 1877 lncRNA 0.37 2 30844055 30845956

Neighbor

gene id symbol gene type direction distance location
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 41547 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 123810 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1084430 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1552452 29280150 ~ 29291603 (-)
LOC103040276 NA coding downstream 1565491 29269921 ~ 29278564 (-)
gnl3 NA coding upstream 1341 30847297 ~ 30856549 (-)
sfmbt1 sfmbt1 coding upstream 349866 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 392515 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 459611 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 584935 31430891 ~ 31435487 (-)
G193818 NA non-coding downstream 115193 30724432 ~ 30728862 (-)
G193770 NA non-coding downstream 243157 30537778 ~ 30600898 (-)
G193764 NA non-coding downstream 339018 30436885 ~ 30505037 (-)
G193736 NA non-coding downstream 635077 30156138 ~ 30208978 (-)
G193723 NA non-coding downstream 1038140 29804482 ~ 29805915 (-)
G193866 NA non-coding upstream 47671 30893627 ~ 30911740 (-)
G193886 NA non-coding upstream 122363 30968319 ~ 30983362 (-)
G193889 NA non-coding upstream 165331 31011287 ~ 31011543 (-)
G193891 NA non-coding upstream 172791 31018747 ~ 31019226 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding upstream 292018 31137974 ~ 31168883 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 13098 30809794 ~ 30830957 (-)
G193737 NA other downstream 663929 30165761 ~ 30180126 (-)
G193541 NA other downstream 2245417 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2257833 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2630985 28194379 ~ 28213070 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 324342 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 328851 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 604847 31450803 ~ 31654210 (-)

Expression


Co-expression Network