LOC103039379 (capn15,LOC107753037,LOC107677277,LOC107754538)


Basic Information

Item Value
gene id LOC103039379
gene name capn15,LOC107753037,LOC107677277,LOC107754538
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 589822 ~ 624742 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685597.1
CCCGGCAACAACATCCTCATAGCACACAGGGAGCGcaGTCACTCTCACTCCCCCGGCTCCATGGCAGCAGTGGTGAGCTCTGATTGGTCGTGTGGGCGCTGCACATTCCTGAACCCGGGTGGTTCTCCTCGATGCTCCATCTGCGAGGCTCCGCGCCACAAACCGGACCTCAACCACATCCTGCGACTCAGCGGCGCCCCCGAGCCTCGCTGGACCTGCCCACGCTGTACCCTCACCAACCACCACGCGGCAGGACTATGTTCAGTCTGTGGCTCCTCTCCCCCAGTCCCCAATGGCCCTGCTTCGCCAGCTCAGGTTCCGCCCACTTCCACTTTAGAGTCTACCTCCGTCTCGGAGCCCAGAGGACAGCAGGCTAGTGAGGATTCCCGGGAGGCGGAGTCTAACGGAGAGGTCAGAGTGAGGGTGGGTGGGGACTTGTCCTCAGGGTGGGCGTGTCCTCGCTGTACGCTGGTTAACACACCTGTAGCGATGTCCTGTTCGGCGTGTGGCGGCCCACGAAAACTTTCCCTGCCCAAAATCCCGCCCGAGGCACTCGTCGTTCCAGAGGTTCGAACACCTGTATCGGGGTTTCCCACACAAACTGGAGGGGCGCCGAATGCCCCGCCCCTTCTATCGATGTCACCTTTCAACAGGAGTATTCGGCCACCTCCAGCCCCCTCTGATTCGCCCTCTCCGCCCCCCAGTACGAACCCTGCCCCCTTTTTACCACCTTCGTTTTCTTCCCTTCAGAACAACCCTGTTCCACGCAGCAGAAGGGAAGTCCCGCCCCCTGGAAGGCCGCcaaaccccgccccctccccgACGTCACCTTCCTCCGCCGGCCCGACCGCCAAACCCAAGTCAGAGCAAACTTATGCCATCAAAAGACTCAGCGttctggaggaggaggagccaaACCATCCGGTGGCGCCGGTCACGTCTCCGCCGTCCTGGAAGTGTCCGGGATGCTCCGCCCCCTCTGGACCCTCCATGCTGGCGGCGGGGCGATGTGACGCGTGTAAGGGATCACGTCCGGGGTCGAGTGGTGATGTCATCGATGTTTTAGGTGAATCGGTACGTTTTACTCCGGCGTCGCCGTCCAGCCCGGTCACATCGTGGGCGTGTTCTAAATGTACGTTAAGGAACCCGACAGGAACGGGACACTGCACGGCCTGCGGCTCCTCCAAACTGCACGGCTTCTCCGAGTCCTGCACGTCCTGCCGTCAACACTCGCACGCTCGCGCCGCGGGGACGGGGCCGGAGAAGGGCGGGGCCACTCAGTGGGCGTGTCCGGCCTGCACGCTGCTGAACGAGGGGCGTGTGAAGCACTGCGTGGCGTGTCACACGGCGCAGCAGTACCTCAGTCTGAAGCGCAGCGCTAAAGCTCTGAGGCGGCGGGAGAGTGTTCACGTGGAGCAGCGGCGGCGCACCGACGAGGGAGAGGCCAAGGAGCTGTGGGAGAACATcgtcagcttctgcagagagaactCAGTGAACTTCGTGGACGACAGTTTCCCCCCTGGTCCTCGCTCGGTGGGCTTCCCCGACAGCGACAGCGTCCAACAGCGAATCAAGAAGTGGCTCCGCCCCCACGAGATCAACTGCAATAACTTTAAGGACCGTGGTGTGAAGTGGTCCGTGTTCCGAACGCCCCGCCCATCCGATATCCTGCAGGGGCTTCTGGGAAACTGCTGgttccTCAGTGCTCTGGCGGTTCTGGCAGAGCGTCCGGAGCTGGTAGAGCGGGTGATGATCACCAGGTCTATCTGTCCTGAGGGGGCGTATCAGGTGCGGCTCTGCAAGGACGGGACCTGGACCACCGTGCTGGTGGACGACATGCTGCCCTGCGACGAATACGGATACCTGCTCTTCTCACAGGCTCAGAGGAGGCAGTTGTGGGTGGCTCTGATAGAGAAGGCTCTGGCGAAGCTGCACGGGTCGTACTTCGCTCTGCAGGCGGGTCGGGCTATAGAGGGGTTAGCGACGCTCACCGGCGCCCCCTGTGAGAGTCTGATGCTGCAGGTCAGCTCCACCAACCCCCGAGAGGAGCCCATCGACACGGACCTCATCTGGGCCAAGATGCTCAGCTCCAAAGAGGCAGGGTTCCTGATGGGGGCGTCCTGTGGGGGAGGGAATATGAAGGTGGATGATGTTGTTTACGAGTCTCTGGGGCTCCGCCCACGCCACGCCTACTCTATACTGGACGTCCGGGACGTACAGGGATACAGGCTGCTGCGTCTGCGGAACCCGTGGGGCCGGTTCTCGTGGAACGGGTCGTGGTCGGACGAGTGGGCTGATTGGCCGCAGCATCTTCGACATGAGCTGATGGCTCACGGGAGCAGCGAGGGCGTCTTCTGGATGGAATACGGAGACTTCATCAAgtactTTGATTCAGTGGATATCTGTAAGATTCACTCGGACTGGCAGGAGGTTCGAGTTCAGGGCAGCTTCCCCAGCAGAGCCAGCGGCCCGCTGACCGTCACCGCCCTCACCGTACTGGAGAGAACCGCCCTGGAGTTCGCCCTGTTCCAGGAGGGcagcaggcgtTCTGACACGGCGGACAGTCACCTGTTGGATCTGTGTATAATGGTGTTCAGGGCTTCGTTCGGCAGTGGGAATAAGCTGGTTCTGGGTCGGCTGCTGGCTCACAGTAAGCGGGCGGTGAAGAAGTTTGTGGGCTGTGACGTGATGCTGGAGCCAGGAGAGTACGCTGTGGTCTGCTGCGCCTTCAACCACTGGCAGATGAACGTCACAGGAACCCCGACTCCAGTACCCAGTCCCaccagtgggcggggccagagTCAGGACTTTCCTGGTTTCATCATGGGCATCTACAGCAGCAGGCAGGTGATGGTGGAGCAGGTGGACGCCACGGCAACCACCCTGGCTGATGCCATCATACTGCTGACGGAGAACAAAGGAGAGAGACACGAGggccgTGAGGGAATGACCTGTTACTACCTGAcgcacgggtgggcggggcttattGTTGTCGTGGAAAACAGACACCCGAAGTACTACCTCCACGTATCATGTGACTGCACGGACAGCTTTAACGTGGTGTCCACCCGCGGCAGCCTCAAAACCATCGACAGCGTCCCACCTttacacagGCAGGTGCTGGTGGTCCTCTCTCAGCTGGAAGGGAACGCTGGATTCTCCATCACACATCGGCTAGCTCACCGCAAAGCAGCGCAGGCTAACCTGGGGGACTGGACCCCCACCAAGGCCACACACTCCCCCCAGCTCACCTCCGACACCGAGGGGCTTCataaaccccgcccactctGACACACgtgcacacccacacacacacacacacacactcaaacacttaCATATACCTACATGCACATATATGGACGGTCAGGGTGAGCATGCTGGAACTACTGAGCCAATCACGCATCTGCTCACTGAGCCAAGACCCGcccactgcaacacacacacacacacacacacaacacacacacacacacac

Function

symbol description
capn15 Predicted to enable calcium-dependent cysteine-type endopeptidase activity and metal ion binding activity. Predicted to act upstream of or within proteolysis. Orthologous to human CAPN15 (calpain 15).

NR:

description
PREDICTED: calpain-15

GO: NA

KEGG:

id description
K08582 CAPN15; calpain-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685597.1 True 3478 mRNA 0.61 14 589822 624742

Neighbor

gene id symbol gene type direction distance location
LOC103029896 mss51,LOC108276074,LOC108416967,LOC108416985 coding downstream 21735 561906 ~ 568087 (-)
tbc1d24 tbc1d24 coding downstream 43118 528403 ~ 546704 (-)
LOC103036123 LOC108237137,LOC106516477,LOC107745898,LOC106517404,LOC107376678,LOC108413863,LOC107552490 coding downstream 71005 498269 ~ 518817 (-)
LOC103036421 NA coding downstream 118858 452117 ~ 470964 (-)
LOC103026596 LOC107667128,LOC107752991,LOC101471794,LOC100697574,LOC105908578,LOC105030909 coding downstream 169039 404550 ~ 420783 (-)
G229288 NA non-coding downstream 725 585602 ~ 589097 (-)
G229298 NA non-coding downstream 34658 554919 ~ 555164 (-)
G229287 NA non-coding downstream 61435 524471 ~ 528387 (-)
G229293 NA non-coding downstream 79655 509857 ~ 510167 (-)
G229274 NA non-coding downstream 95585 481000 ~ 494237 (-)
G229233 NA other downstream 366509 173215 ~ 223313 (-)

Expression


Co-expression Network