CI01000013_00142867_00148461 (SIX5)


Basic Information

Item Value
gene id CI01000013_00142867_00148461
gene name SIX5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 142867 ~ 149008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00142867_00148461.mRNA
ATGGCTTCCTTGTCTTTGGAGTCCACAGAACAAACTGAAAACGGCCCGAAGGAGTCCACGCAAGATGAAGCCAAAGTGAAAGAGGAGACGGATCCGGACGAAGTTTCGGAACAACTGCTCCAAAGCTTCCAGAACTCGGCGCTCAGTTTTTCCACCGATCAAGTCGCGTGTCTGTGCGAAGCGCTCCTGCAAGCGGGCAATGTGGATCGCCTGTGGAGATTCCTCTCCACCATCCCTCCTTCGGCCGATCTGCTACGTGGCAACGAGACCCTGCTGAAGGCCCAGGCTCTGGTCGCTTTTCACCGGGAGGAATTCAAAGAGTTGTACGCCATCCTAGACAGCCACGACTTCCACCCGAGTAACCATGGGTTCCTTCAAGACCTCTACTTGAAGGCGCGCTACAAGGAGGCTGAGAGGTCCCGGGGTCGCAGTCTAGGCGCCGTGGACAAATATCGACTGCGCAAAAAGTTTCCTTTGCCCAAAACCATTTGGGACGGAGAGGAGACGGTGTACTGCTTCAAGGAGAAGTCGCGCAACGCTCTGAAGGAATGTTACAAGATCAACAGGTATCCAACTCCGGTCGAGAAGAAGAATTTAGCCAAAGTCACCGGACTTTCTTTGACCCAAGTAAGCAACTGGTTCAAGAATCGCCGACAGAGGGACCGGACCCCGTCCGGCACCAACAGCAAAAGTGAATCTGATGGGAACCACAGCACAGAAGATGAAGCCAGCAAAGGAGATCTGGAGGATATTACTGACAAACCTGCTGCTCAAGAGACAGGCAGCTCCAATGCTTCTCTTATATCCCTCACTGGTGCTCCTTGCAGTACTGGTCAGCTTATTCTCAACAGCACCGGGGGATTCCTTACAAGCTCTCATCCACTGCTGCTCAATGGGAGCCCTATACTCTCAGGGGCGGGAACCGGGGTCATTATTAATGGGTTGACACTGAGCGATGGCCACACAGTAACTCTCAGTCCTGTTACAGCTAATGCACCATTGCTACTTAATGGGGCTCAAGTGATCTCCAAAGATGAACGAGGCATCAATGATATGGAGGCCCAAGGCAGCCTGCCCACTGTGGTTCTGAATCCACAAGCCAGTCTAACTAGCACAATACCTCTCTCTCTTAGCGAGGATGCAAAAACAGCCAGCAGCAATGTCTCTCCACTGGATTTCATCAGTCTTCCAGAAGCATTGAAGAATCCAGATAGTAATCAGTCATTGCCTACAAACTCTATGTCCTCGCCCACCATCTCCACTTCTGTCATCTCTCCCACGTCTCTTCCTTCAGTGATACTGGCCCCAAATCGTATTCCTGCATCAACAGCTGGCTCTGTGAGTTCAGTCATCTCCAGTCCCATGGTGCCATTACAGCCCACACAGCCTCCCGAAATTGTTGTATTAGGAAAGACTGACCCTCAGTCACCAACTTGCAGCTCCATCTCCAACCCTCAAGTGTTATCTTTACCCCAGGTGGTACCATCGATACAGGGCGTTCCAGTTTCTCAACTGATGCAGCCTACATCTGGAGCCACAGTGTCATCTTGCCCCCAGCTTGTTCCAGTCTCCCCGGTCAATCCACAGTTACCCCAAGTCTCCATTCCTCAGTTTCAGACACAGACCTTGCACATTGGTCCAAGACTTGCTCAAGCACAGCCCCAAAATGGCTCCACCACACTAAGCACCAGTAGTGCTTTATCACTCCCCCAGATGGCTGATGGACATGTCACACAAGTGCTTACACCTCAGCTAGGAGATGAATCTACTTCAGCCACCCTTCCACAGATACAGACTTCCATGGGGACGCAAGTCATTCCCATCTCCTCCCCGACTCAAGTCGTTCCTATATCCCAACCCAAAGACTCAGGCCAGCCTCAGCTGGTCCCCCTGTCACTGCCTCAACTTATGCCTGTGTCATCTATTGCGGGAACTCCAACTGGAACCTTCTCCTTCCCTCAGGTGGTCCCAGCAACACCATCTCTTTCCATTCCGTCCCCTGGAGGTGCTTTCCAGATTCTGACATCTGGAGCTGGAACAGGATTGAGTGTTGCCCAGGGACCGATACGCCTTAGCCCAATAGGGCCTCCTCAGAGTGTCCCAACTGGAACCATCCCAGGAGTTCAGCTTCTCAACTCTGGGGTGATTCAGCTGCCTTCTGCCTCTCCAGGCAACTTCCTCTTAGCAGGTGGCATTGGGAGCAGCCCCATCCTAAGTGTTCAAAACGGCAAACTCATCCTTACAATCCCAGCTGGCATCCAGTTTGCAAGCATGCCTGTCAAGTCCGTCCCAGACAATTCGGTCTCGAGCAACAGTACCCTTGATCTCCAACCCTCAGCTGTACATCCACTTGAGAATCAACCAGCACCTTTACTCACTGCTCAAACCTCAAATTCACTACAACCATCTCATTTGGGATTTGTTGGCTCCTCTACACTTTACTGCAGCCCTGAGCCAGGGACCATTGCCAACCCAACCCCAGGAGCCTCTCCTAACACCCCAGACTCATCCAGCACTCCCACTCCTACAGGCGTCCTACAATCCCAGCAGACCCTTAGCCCTGATAGCATGCTACCACTCAGTCCGATCTGTAGCGGTGTGGCAACTGGGCCCCACCTCTCCCAGCCAGCCTGGAGCCCTGTCCCACTGTCTTCCTCTGCTGGTCTGACATTATTTGACATGCGTGGGAAAGGGGATCTTCCAGAGGACCCTGCTTTGTTAGGCCTGCCAGGAGGAGAGTCCCTCCTGTTGGGCACTCCTCCGGGTGAGGATGTGGAGAGAGATTCTCAGCTGGATGAAGTGGAGGACATGGACGGGGACTCGAAAATCCTTACACAACTGCAGTCTGTCCCTGTGGATGATGACCTGGGTTTGTAATTATCAGTTCTGCTAGATGCAGTTCATGTTAAATCTCAGCCTGGTTAGAGTTGCATTCAACCATGTCCCTGAAGCGAGAGGAACTATGATTTATGACCTCAGAGGTTTGAGTCTTTCCTCACCTTTCCTTAAATAGTGGAAGTATTCAATCTAATAACTTTGTTGGAAAGAACCTCTCTCTCTTATATTTTGAATTCATCTGTGGAAACAATGTATTCAGCAAGGGCATGACTAGAGGTTAAGTAGAGGAAAAGGCACAGCCATTTTGTCAGAGATGACATTTGTATAACCAATATTCACCTCTAGGAATCTAAGTTTGCGTCTACATGTTAGCCCTGATTTTGATGAAACACAGCTTGTGGCTTGTACAAGGGCTACCATGGCTACCTAAGTGGTAAAAAAGGCACTAATATGTAAAAGGCAATCAAGATTGTTTTATCTGGGAGTGAAGAGCATGCGGGAATGCCTTCTTTTGTGCCTTACGTTTTTGTTACTTGTCAGTTTTATAGATAAAATGACTCTGAACAGAACTTTTATCATTTTAAGA

Function

symbol description
six5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in branchiootorenal syndrome 2. Orthologous to human SIX5 (SIX homeobox 5).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00142867_00148461.mRNA True 3424 mRNA 0.50 3 142867 149008

Neighbor

gene id symbol gene type direction distance location
CI01000013_00082083_00124049 YAP1 coding upstream 18818 82083 ~ 124049 (+)
CI01000013_00055395_00073103 NA coding upstream 69435 54114 ~ 73432 (+)
CI01000013_00151644_00152374 SIX9 coding downstream 2127 151135 ~ 153096 (+)
CI01000013_00259782_00293697 MAP3K10 coding downstream 110774 259782 ~ 293697 (+)
CI01000013_00432775_00439564 RCN2 coding downstream 283767 432775 ~ 439579 (+)
CI01000013_00441663_00456168 PSTPIP1A coding downstream 292655 441663 ~ 456456 (+)
CI01000013_00473761_00488628 NA coding downstream 324130 473138 ~ 488832 (+)
G77505 NA non-coding upstream 7214 134702 ~ 135653 (+)
G77541 NA non-coding upstream 28430 89806 ~ 114437 (+)
G77555 NA non-coding upstream 84449 58062 ~ 58418 (+)
G77562 NA non-coding downstream 12575 161583 ~ 161803 (+)
G77507 NA non-coding downstream 13287 162295 ~ 165109 (+)
G77534 NA non-coding downstream 144150 293158 ~ 300396 (+)
G77538 NA non-coding downstream 209493 358501 ~ 359239 (+)
G77635 NA non-coding downstream 222563 371571 ~ 371944 (+)
G77533 NA other downstream 559825 708833 ~ 709549 (+)
G77695 NA other downstream 797513 946521 ~ 952969 (+)
G79309 NA other downstream 2317757 2466765 ~ 2467171 (+)
G80062 NA other downstream 3435000 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3915925 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013547 six5 coding NC_007129.7 CM002902.2 37245331 ~ 37252036 (-)