CI01000013_00432775_00439564 (RCN2)


Basic Information

Item Value
gene id CI01000013_00432775_00439564
gene name RCN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 432775 ~ 439579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00432775_00439564.mRNA
ATGGCAACAAGCTCAGCTGAAAACTTTAGCAACCAGCCTTTCGAAAATTTAAAGATTAGATACACAACTCTGTTATTACTGGTGGCCTGTTGTGCATCAGGAGCTGTTGGAAACCAGATTGTCCAAGAGGATCATGTCAAACATAACCATGAACATAATGCAAATATGTTTCTTGGCTCTGAGGACAAAGATGAAATACAGAAACTAAGTCCATCTGAGCAGCGGAAGCGACTGGTGGAGATAGTGAAGAAGATTGACACCAACTCTGATAAATACCTGACTCCAGAGGAAATCACATTATGGATACAGAGGGTGTACAGGAGATACGCACTGGATGATGCTGAGGAACGCTTCCCTGAATTTGACTCCAACAAAGATGGTCTGGTCACTTGGGACGAATACAATGTGGTCATGCATGGTCATACTGTGGAAGTGGATGCAGATCCTGTTCTTGACGACCCAGAGGAGGAGTCTCTCAGATTCCTCCATGCAAAGGAAAAAAGACGTTTTGATTTTGCCGATATGGATGGCTCAGCTGGCCTGAACTTAACGGAGTTCCTTGCATTTACTCATCCATCTGAGGTGGACCACATGGCTGATTTTGCTATTGAAGATGTGCTTACTGAATATGATTTGGATAAAGATGGATTCATCAGCTTGAGTGAATTCATTGGAGATCTCCGAGCAAATGAGCAGGACGAGCCCTCGCAGTGGGAGGTTGAGGAAACGGTGCGCTTTAAAGATCTCTATGATCAGGATAAGGATGGAAAACTCAACAGGGATGAACAGCTCCGCTGGGTCGCTCCGAACAGTTATGGGTCGGCACGAGAAGAAGCTATTCATCTAATCAAGGAAATGGATCAAGATGGAGATGAAAGGCTCTCGGAAGCAGAGATTTTAAAAAACCAAGACACTTTCATGAACAGTGAAGTGACCGATTACGGCAGACAGCTCCATGTGCCGCATGATGAACTGTAATAGTTGGATCCTTTT

Function

symbol description
rcn2 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Orthologous to human RCN2 (reticulocalbin 2).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00432775_00439564.mRNA True 993 mRNA 0.44 8 432775 439579

Neighbor

gene id symbol gene type direction distance location
CI01000013_00259782_00293697 MAP3K10 coding upstream 139078 259782 ~ 293697 (+)
CI01000013_00151644_00152374 SIX9 coding upstream 279679 151135 ~ 153096 (+)
CI01000013_00142867_00148461 SIX5 coding upstream 283767 142867 ~ 149008 (+)
CI01000013_00082083_00124049 YAP1 coding upstream 308726 82083 ~ 124049 (+)
CI01000013_00055395_00073103 NA coding upstream 359343 54114 ~ 73432 (+)
CI01000013_00441663_00456168 PSTPIP1A coding downstream 2084 441663 ~ 456456 (+)
CI01000013_00473761_00488628 NA coding downstream 33559 473138 ~ 488832 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding downstream 51037 490616 ~ 491630 (+)
CI01000013_00526975_00537006 SLC28A1 coding downstream 87396 526975 ~ 537074 (+)
CI01000013_00561825_00581324 NA coding downstream 121271 560823 ~ 581576 (+)
G77510 NA non-coding upstream 31120 400617 ~ 401655 (+)
G77636 NA non-coding upstream 60367 372053 ~ 372408 (+)
G77635 NA non-coding upstream 60831 371571 ~ 371944 (+)
G77538 NA non-coding upstream 73536 358501 ~ 359239 (+)
G77534 NA non-coding upstream 132379 293158 ~ 300396 (+)
G77519 NA non-coding downstream 17302 456881 ~ 457113 (+)
G77502 NA non-coding downstream 17746 457325 ~ 457873 (+)
G77540 NA non-coding downstream 68973 508552 ~ 511252 (+)
G77518 NA non-coding downstream 72572 512151 ~ 512902 (+)
G77533 NA other downstream 269254 708833 ~ 709549 (+)
G77695 NA other downstream 506942 946521 ~ 952969 (+)
G79309 NA other downstream 2027186 2466765 ~ 2467171 (+)
G80062 NA other downstream 3144429 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3625354 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013466 rcn2 coding NC_007129.7 CM002902.2 26967414 ~ 26977940 (-)