CI01000013_01989323_01993472 (NR2F2.L, NR2F2)


Basic Information

Item Value
gene id CI01000013_01989323_01993472
gene name NR2F2.L, NR2F2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1988531 ~ 1994075 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01989323_01993472.mRNA
CTATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCCAGCGCCTACAAATCGCAGTCACTTCCTAACCTCCCCCTTTTTAACATATTTGATCACTTTGATTCTCTGTTCTCTCTCTTATTATTTTTACGCGCATGAAGGAGGTTCTATAGGTTGTGATCTTTTTGTTATATTATCGGTCCTGCTTGCCGGAGAGTTGACTTCATATTTGACTCGAGCATAGGCTGCAACTGCGCGCGGCTGCTAGCGCTACCTCATCTGAAGAAAAGGAAGAAGCAGCAATATTTTTTTGCCAGTTGTTGGTTTTCTTCAAGACTTTACGCTGGAACTTCTCGCGTGTCGCAAGTATCTTTGAAAGCCGCGTGTTTCTGTGCGTCCGAACATCGCTACACGCGTGAAGTTAACTGTCCTGCTCGGTTCATATCTTCTTCCGCCGTGTTTATTTTCCATTTTTCCTTGATGGGTTTACTGGATGGATGACTGCAAGTGCCCCTGGACTTGGCCTCTAAGAGCAAGGCTGCTATTCGGCTCGTCTTTGCTTCAGTTTTAACCACATGCCAGGTAACGCTATTCCAGTCAAGAAATAGACTACTGTTTGTCGTCGGTACGCAACTTTGAACGGACATTCAGACTCTAACCGACCGTGCCGATCCTGAATTATTTATTTTATCTTCCTAAGTGAGAAAGGCACCGTGCTTCGTTATCATTTGTTTTTGAAACAAAGCATTCCGAAACCAAAAACGGGGAACAAAAAGTTTTTTTTAACGCTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACCCAGGGCACCCTCTCATCGCAAGCCCAAGGAGGACTATCCCTTCCAACCCCTCAACCAGGCCAGCTGGGTCTGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCCCGAACAACAACACACAGTCCACCCCGACGAACCAGACGACGCAGAGTCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGCAAACACTATGGCCAGTTCACTTGCGAGGGCTGTAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAGCCGTGCAAAGGGGACGGATGCCACCCACACAGCCACATCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTACTACGAGCGGAGCCCTACCCAACTTCTCGGTATGGCAGTCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGTGAACTGGCAGCCAGGATGCTGTTTAGTGCGGTAGAGTGGGCCAGGAATATTCCCTTCTTCCCAGACCTCCAAATTACCGACCAGGTTGCCCTTTTGAGGTTGACCTGGAGTGAGTTGTTTGTGCTCAACGCTGCTCAATGCTCCATGCCGCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGGCTCCATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTAGAAAAGCTCAAAGCTTTGCACGTTGACTCTGCTGAATACAGTTGTTTAAAGGCCATCGTTTTATTCACTTCAGATGCTTGTGGCCTGTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCCCAGTGCGCTCTGGAGGAGTACGTTCGGAGCCAGTATCCCAACCAGCCAACTCGATTTGGGAAGTTATTACTGCGCTTGCCCTCTCTCCGTACAGTCTCGTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTGTCGGGGAGCAGTTTTAACTGGCCTTACATGTCGATTCAGTAGGCAGAAGGAATGATCAAAGGGGCTGTGACTACAATAGTTAGCGCTTCTTTTGTAGAAGGAAACGGCTGTTACACGAGTTTACTTTCACGAAGAAAGACTTTCATACAATGACTGTGAATTTTAAAATTGAGACATTCAGTGAAGCCTCGAAATCCAGAGATTGCTCCCTGTGTCATTCTGAACAGTTTGTTCTAATGTTTTTTTTGTTTGTTTGTTTGTTGTTTTTGTAAAAAATAAAATAAAATAAATACAAAAATGAAGAAATACATAACCCACTAAAATTAATACAGAAGAAAAAAGAAAATAATTCAAGGATTTTCACAATCCTTTCTGGACAGCAAAACTATAAAGTGCATTTAAGCGACAATTTGGAAAGATTAAGGAAGAAGAAAAAAAGTTCTTTTTCTAAATTGCTATATTGTCCTGTGTCCATGTATCTATAGCTGTTTTTGTAATTTTTTTGTTTCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTCTGTAGTATGTTATTTTGTTTTTTTTGTTTTTTTGTTTTTCTAATAACCATGACTTCTTCTAAAACAGTTCAGAATGTAAAGATGTTCTTCGAGAATTCGAGAA

Function

symbol description
nr2f2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2).

GO:

id name namespace
GO:0060173 limb development biological_process

KEGG:

id description
K08548 NR2F2, TFCOUP2; COUP transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01989323_01993472.mRNA True 2658 mRNA 0.45 3 1988531 1994075

Neighbor

gene id symbol gene type direction distance location
CI01000013_01950237_01964249 NA coding upstream 24241 1950015 ~ 1964290 (+)
CI01000013_01762491_01764612 NA coding upstream 223726 1761758 ~ 1764805 (+)
CI01000013_01629280_01635701 NA coding upstream 352759 1629228 ~ 1635772 (+)
CI01000013_01443540_01469011 CHD2 coding upstream 519455 1443540 ~ 1469076 (+)
CI01000013_01405290_01429838 NA coding upstream 558218 1405290 ~ 1430313 (+)
CI01000013_02033469_02034368 NA coding downstream 39040 2033115 ~ 2034738 (+)
CI01000013_02081079_02127936 NA coding downstream 86591 2080666 ~ 2128269 (+)
CI01000013_02386700_02394730 NA coding downstream 392273 2386348 ~ 2395296 (+)
CI01000013_02409027_02409452 NA coding downstream 413231 2407306 ~ 2409607 (+)
CI01000013_02411870_02429950 NA coding downstream 416352 2410427 ~ 2429957 (+)
G78265 NA non-coding upstream 8457 1979842 ~ 1980074 (+)
G78264 NA non-coding upstream 9002 1979275 ~ 1979529 (+)
G78263 NA non-coding upstream 9803 1978383 ~ 1978728 (+)
G78260 NA non-coding upstream 13150 1975060 ~ 1975381 (+)
G78254 NA non-coding upstream 23108 1965163 ~ 1965423 (+)
G79075 NA non-coding downstream 136443 2130518 ~ 2130751 (+)
G79232 NA non-coding downstream 309242 2303317 ~ 2303695 (+)
G79241 NA non-coding downstream 322655 2316730 ~ 2316943 (+)
G79185 NA non-coding downstream 377655 2371730 ~ 2385188 (+)
G79194 NA non-coding downstream 425446 2419521 ~ 2420107 (+)
G77695 NA other upstream 1035562 946521 ~ 952969 (+)
G77533 NA other upstream 1278982 708833 ~ 709549 (+)
G79309 NA other downstream 472690 2466765 ~ 2467171 (+)
G80062 NA other downstream 1589933 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2070858 4050837 ~ 4065829 (+)
G80845 NA other downstream 2841003 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4062223 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding CM030123.1 CM030123.1 34796895 ~ 34804878 (-)