CI01000013_01443540_01469011 (CHD2)


Basic Information

Item Value
gene id CI01000013_01443540_01469011
gene name CHD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1443540 ~ 1469076 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01443540_01469011.mRNA
CAATTCAGCATCAGAGGAATCTAACCGCTCGGGATCAGAGTCCGGGAGTCAGTCGGAGAGCGAGCAAGGAAGTGATAGAGCTCGTTCCCGGCGTTCCGAGTCCAACAGCACCTCCGATTCTGAGAGCCACTTTGAGTCAGGGAGTGAATCCACTGGGTCCAAATCCCGTCAGACCTCAACACAGGCCAAAGACAAACCAGTCCGGAAGAAAGACAACCTGGCAGACGTGAAGAAGATGTGGGAGGAACATCCAGATATTTATGGTGTTAGAAGATCCAGTCGCAGCAGACAAGAGCCTGCCCGCCTCAACATCGGAGCTGAGGGCAGCAGTGATTCAGAGGGGGAAAGTCCCAAAAGAAAAAGCTCACGGCAGAAAAAGAAAGAAAATACCTGGAAAGATGATGACTCAAAAGACGAAGAGGATGTTGAGGAAGAGGCCAGCAGTTCAGAGAGTGAGCAGGAAGAGAAAAAAGTTAGATCCAGACGACTTCCTGCTAGAAGTTACAAGGAGGACCAGAATGATTTCGAGACCGACTCTGATGACCTTATCGAAATGGCAGAAGGAGCCGAGGAGCAACAGGATGACGACAGTGAGACCATCGAGAAGGTCCTTGATACCAGGATTGGCAAGAAAGGAGCTACCGGAGCTTCCACAACCCTCTATGCTATTGAGGAAAATGGGGACCCTGGAGCAGACTTTGACCCTGAGAAAGAGGAAGGGGAAACTCAGTTCCTCATCAAGTGGAAAGGCTGGTCCTACATCCACAACACCTGGGAGAGTATGGATTCCCTCACTCTTCAGAAAGTCAAAGGGATAAAGAAGATAGAAAACTTCAAGAAGAAAAACGATGAGCTTAACGCTTGGTTGAGGAAAGCGTCACCTGAAGATTTAGAATATTACAATTGCCAGCAAGAACTAACCAATGACCTGAGCAAGCAATTCCAGATAGTAGAGAGAGTGATCGCCCATAAAACCGCTTCCACTGAGCCAGAGTACCTGTGTAAGTGGATGGGGCTGCCGTATGCAGAGTGCACATGGGAGGATGGCGCTTTAATCACAAAGAAATTTCAGGCCTGCGTTGAGAGTTTCCAACACAGAAATGCCTGTAAGACAATCCCCTCCAAAGACTGCAAGGGTGATGAAGCATTGCGCCACGCTATGTTATGTGAACCCTGCCATCTTTTTCTGCCCAAATGGAAGGTGTTGAAACAGAGGCCAAGATTTGTGGCCTTGAAGAAGCAGCCTTCTTACATTGGAGATGAGAACCTTGAACTCAGAGATTACCAGCTAGATGGAGTGAACTGGCTGGCCCACTCCTGGTGCAGGTGTAACAGTGTTATCTTGGCTGATGAAATGGGCCTGGGAAAGACCATTCAGACGATCTCCTTCCTGTCCTACCTTTTTCATCAGCACCAGCTTTATGGTCCCTTTATCGTGGTGGTGCCCTTGTCAACCCTTACCTCCTGGCAGAGGGAGTTTGAGACTTGGGCCCCAGATATGAATGTAGTGGTGTACCTGGGAGACGTCACAAGTAGAAAGACAATCCGGGACTATGAATGGATACACCAGCAGACAAAAAGGATCAAGTTCAATGCACTTTTGACCACATATGAAATTCTACTGAAGGACAAGGGAGTGCTAGGGAATATAAACTGGGCTTTCCTCGGAGTTGATGAAGCTCACCGGCTTAAGAATGACGACTCGCTGCTATATAAAACTCTGATCGACTTTCGATCCAATCACAGGCTGCTCATTACTGGGACCCCACTGCAGAACTCGCTCAAAGAGCTGTGGTCCCTTCTGCACTTTCTTATGCCTGACAAGTTTGAGTCCTGGGAGGATTTTGAGGATGAGCATGGTAAAGGCAGGGATAATGGATATCAGAGCCTTCATAAAGTTCTGGAACCTTTCCTACTGCGTCGTGTCAAGAAAGACGTGGAGAAATCCTTGCCGGCTAAAGTGGAGCAAATCCTCAGAGTTGACATGTCTGCCCAGCAAAAACAGTTCTACAAATGGATACTAACAAGAAACTACAAAGCCTTGTCCAAAGGCACCAGAGGCAGCTCTTCTGGCTTTCTTAACATTGTCATGGAGCTGAAGAAGTGTTGTAACCATGGTTTCCTCATCAAACAACCAGAGGAGGTTGAGAATGAAAAAGCACAAGAGCACCTACAGAGCTTGGTGCGTGGCAGTGGGAAACTGGTTCTCCTGGACAAGCTTCTCACACGACTGAGGGAGAGAGGCAACCGTGTGCTCATCTTCTCTCAGATGGTCCGCATGTTGGACATCCTTGCTGATTACCTGTCTATGAAACGATATCCATTCCAGCGTTTGGACGGCTCCATCAAGGGAGAGATCCGAAAACAAGCACTGGACCACTTTAATGCTGAAGGCTCTGAGGACTTCTGTTTCCTGCTGTCCACCCGAGCTGGAGGTCTTGGGATTAACCTGGCCTCTGCCGACACAGTGGTTATCTTTGACTCAGACTGGAATCCACAGAATGATCTTCAAGCCCAGGCCAGAGCCCACAGGATTGGCCAGAAAAAGCAAGTGAATATCTATCGTCTGGTCACAAAAAACACTGTGGAGGAAGACATTATTGAAAGAGCAAAAAAGAAGATGGTTCTAGACCATCTTGTCATTCAGAGAATGGACACAACTGGGCGAACTGTATTGGATAACAACTCTGCAAATTCAAATTCAAATCCCTTCAATAAAGAAGAACTGACAGCAATCTTGAAGTTTGGAGCAGAGGATCTGTTCAAGGAACCTGAGGGAGAGGAATCAGAACCTCAGGAAATGGATATTGATGAGATCTTGCGGCTTGCTGAAACCAGAGAGAGTGATCAGGGATCTAGTGCCACTGATGAGCTTCTGTCACAGTTTAAGGTGGCTAACTTTACCATGGATGAAAGCACACCAGATCTTGAGGAGAGGGCTGCGCAGGCCAATGACAGCGACAGTGACGTGGGATCCAAACTGAAGAACAGATCCTCAGGTTCAGATAGCGAAACAGATGACAGCGAGGATGACAAAAGGCCCAAGCGGAGAGGCAGGCCAAGAGCTCGCAAAAACAACGTGGAGGGATTTACTGACGCAGAGATCCGCAGGTTCATAAAGGCATACAAGAAGTTTGGAGCTCCACTTGAGAGGTTGGAGGCGATTGCCCGTGACTCTGAGCTGGTGGATAAGTCCATTGCAGACCTGAAGCGACTGGGGGAACTGGTACACAACAGCTGTGTGACTGCAGTACAGGAGCATGAGGAGCACATGAAAGAAAACCCTGTGGAAGCGAAAGGGCCAGGGAAAAGACGAGGCATTAACATAAAGATCTCTGGAGTTCAGGTTAATGCAAAGTCCATTATCCAGCATGAAGAGGAGTTTGAACCGCTGCATAAATCTGTGCCTCCAAATCCTGCTGAAAGGAGCAAATTTCAGCTTACCTGTCGGGTGAAGACTCCGCACTTTGACGTAGAATGGGATATTCATGACGACACACAGCTGTTATTGGGTATCTATGAGCACGGCTACGGCAACTGGGACCTGATCAAGACCGATCCTGATCTCAAACTTTCTGAGAAGATTCTCCTAGATGACCCTGATAAGAAACCTCAGGGAAAGCAGTTACAGATGCGAGCAGACTACTTGCTTAAGATGCTGAAGAAAGAGCAGGAAAGCCAAGATGCTATTAAAGCAGGAGATGAGCCCAAAACCAAAAAGAGGAAACCTCGAATCAAGAACAAGGCCCCTAACAATGATCTGGTCAATGAAATTGCCTCTCCTCGTCTCTCCGATAACCCATCAGAAGAGGGAGAAGTGAAGGACGATGGAGCTGAAAAATCACCCACAAAGAAGAAACAGAAAAAGGATAACAAAGAGAACAAAGAAAAAACAGGAACTACTAAAAAAGAAAAGGAGGGGGACAAAGACAAAAGGCGCTCCAAGTCCAGAAAAGAGAAGGCCAAACCAGGAGGAAAAGGAAAGAAAGCTCAGGGCCCCGTGCACATTACTGCAGGAAGTGAGCCTGTACCAATTGGAGAGGAAGATGATGAGCTGGACCAGGAAACATTCAGCATTTGTAAAGAGCGGATGAGGCCGGTGAAGAAGGCTCTGAAGCAGTTGGATAAGCCAGACGAGGGGCTGTCGGTGCAGGAGCAGCTGCAGCACACTCGCACCTGCCTGCTGAAGATCGGAGACCGCATCACAGAGTGCCTTAAATCGTACAATGACCCTGAGCACGTCAAGACCTGGCGCAGAAACCTCTGGATTTTTGTGTCCAAATTTACTGAGTTTGGCGCCCGGAAACTGCACAAGCTGTATAAGATGGCTCAAAAGAAGCGCTCGCAGGAGGAAGAGAAAGAGCATAGGAAGAAGGATGATCCTGCCAGGAAAAAACCCTTCAGACCTGAACCGTCTGGATCTAGTCGAGATTCTACCGGTGCCCAGCCCACAACCAAACCCCATCCTTCGGTCAACCATCCACCTGGACCTCCCTCTCACGCCCACCACAGAGAGCAATACAACCAGCCCAATAAAAGGCACTTTCCTAATGATGATAGGGGAGAATGGCAAAGAGACCGTAAATACAGCTACCCAGGTAACAGCAATCAGCCCTGGCAAGGGGATCGGCATCACCCATATGAGCCTCACAGGTACAAGGACCATCACTATGGCGACCGTCGTCCTCATGACTACCGCTCAGGAGGTTACCGTAACAGCGGTTCCCCTCGCAAACGAACCTATGACCAGTATGGTAACGATAGAGATCATCGGGGCCATCGAGACTATTATGACAGACATCCTGACCCTAAGAGGAGGCGTTCGGATGAGTACCGCTCCCCGAACTACCACCAAGGGGGAGGAGGGCATCCACAGGACTTCAGAAGGATGCCTGACCACAGAGGTCCCCCTGGAAACCATGGCCCCATGGGGCCTGATCACTACCGCCCCTTCCACCCAGACAAACCCCCACCCCTGATTGACCCCCGTTCCCCTCAGTCTCAGAAATCCCCACTTGAGTCGATCTCACCTGCTTTGGATAGAACTGCAGAGCAGAAACCTGTGACGGACTTTAATTGGAACAACAGGAAGACGTGAAGTGAATATGTAATGCAGAGACGGTCTGTACTGCCAAAGGACGTGGCAGAAAGGCCACCCGGGCA

Function

symbol description
chd2 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Acts upstream of or within chordate embryonic development and locomotion. Predicted to be located in nucleus. Used to study childhood onset epileptic encephalopathy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human CHD2 (chromodomain helicase DNA binding protein 2).

GO:

id name namespace
GO:0040011 locomotion biological_process

KEGG:

id description
K20091 CHD2; chromodomain-helicase-DNA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01443540_01469011.mRNA True 5163 mRNA 0.49 34 1443540 1469076

Neighbor

gene id symbol gene type direction distance location
CI01000013_01405290_01429838 NA coding upstream 13227 1405290 ~ 1430313 (+)
CI01000013_01335438_01381270 SLCO3A1 coding upstream 62270 1335438 ~ 1381270 (+)
CI01000013_01275415_01295230 PLIN1 coding upstream 148216 1275122 ~ 1295324 (+)
CI01000013_01220794_01229752 GNRHR4 coding upstream 212582 1220794 ~ 1230958 (+)
CI01000013_01115756_01164524 NA coding upstream 279016 1115756 ~ 1166617 (+)
CI01000013_01629280_01635701 NA coding downstream 160152 1629228 ~ 1635772 (+)
CI01000013_01762491_01764612 NA coding downstream 292682 1761758 ~ 1764805 (+)
CI01000013_01950237_01964249 NA coding downstream 480939 1950015 ~ 1964290 (+)
CI01000013_01989323_01993472 NR2F2.L, NR2F2 coding downstream 519455 1988531 ~ 1994075 (+)
CI01000013_02033469_02034368 NA coding downstream 564039 2033115 ~ 2034738 (+)
G77895 NA non-coding upstream 125577 1317721 ~ 1317963 (+)
G77894 NA non-coding upstream 125877 1317251 ~ 1317663 (+)
G77829 NA non-coding upstream 256349 1186909 ~ 1187191 (+)
G77826 NA non-coding upstream 262112 1181202 ~ 1181428 (+)
G77875 NA non-coding downstream 1744 1470820 ~ 1471360 (+)
G77918 NA non-coding downstream 15398 1484474 ~ 1484721 (+)
G77929 NA non-coding downstream 36807 1505883 ~ 1506110 (+)
G77946 NA non-coding downstream 61244 1530320 ~ 1530575 (+)
G78008 NA non-coding downstream 144433 1613509 ~ 1613776 (+)
G77695 NA other upstream 490571 946521 ~ 952969 (+)
G77533 NA other upstream 733991 708833 ~ 709549 (+)
G79309 NA other downstream 997689 2466765 ~ 2467171 (+)
G80062 NA other downstream 2114932 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2595857 4050837 ~ 4065829 (+)
G80845 NA other downstream 3366002 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4587222 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007874 chd2,LOC107715217,LOC107690375 coding CM030123.1 CM030123.1 35556250 ~ 35594137 (-)