CI01000013_02859975_02863496 (TMEM170A)


Basic Information

Item Value
gene id CI01000013_02859975_02863496
gene name TMEM170A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2859975 ~ 2863946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02859975_02863496.mRNA
ATGCAGGACGACTATAACGTGGAGATAGGATTCGTCAAGCAGATCCTCAGTTTGAATTTGGTGCCGAGGAAAAATGCCACCAACTGCGGGAGGAACGACACATCTCTGTGCGATTTCTCCGAGATGTGGTATGGGGTGTTCCTGTGGGCTGTTGTCTCCTCATTGGTGTTCCACCTGCCCGCCGCCCTCCTGGCTCTAGCAACACTCCGCAGACATAAGATGGCACGATTTTTCCCAGTCGGCATCCTGCTCATGGGTATCATCGGCCCGCTCTTTGGAGGGGTTCTTACTAAGTGCTGGCTACCCTGTAGCACTGAGACATTGGCACACCAGGCTGCCGTCAAGAGGAGAGGAAGCTGTTCAGTCACCTGGGCGTCATATGCAAAACATGGAGGCCTTACTTCCCAAACAGTCCCAACAGTTTCCTTTGATACAGAACAATGCAACTACATTAACAGCAAGAGGTGTAAGGCTGAACGGGATATGAATATGATCTTAATACAGTCGCAGAGTCTTTAGACTAATCTGAGGAATTAAACCAATCTAAACCAAATTTAATTCTCAAATATTACTTTTACATTTCTTCGGTACAAGCATTTGTAGACTTGTGTTCACCCATATTACAAGCCCTCAGGAAGTTCTTGTGTTCTGGAAGTTTCATTTAAAGCTCGTATGATGTGAGTTCATCTTTTATGATTGGAGCACTAACATTCGTGGGACGCACTGAAAGCTATGCTTTATTTGTCTGAGCCTATGGTCTCTCAATTGCACAAATGGATTTATTTTTCTAAAGTCCAATCATTCATGGTGGAGTGACTGCTCATTGTTTTTGTGGTTTGTCTTTGATTGTATGGTCTTCTTGACAAATGGATTTGCTCTTTACAACGTAATACTTTCCATTTATTTTTTTCTGGGCAAGTTTAATTTTCTTACTGTATAATAAGTGCCAATTGCTAGTATTTTCATGAA

Function

symbol description
tmem170a Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Orthologous to human TMEM170A (transmembrane protein 170A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02859975_02863496.mRNA True 969 mRNA 0.43 4 2859975 2863946

Neighbor

gene id symbol gene type direction distance location
CI01000013_02815238_02816664 NA coding upstream 42652 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 147476 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 162955 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 173140 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 190154 2666598 ~ 2669821 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 155742 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 223293 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 257139 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 322697 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 361768 3225714 ~ 3237045 (+)
G79523 NA non-coding upstream 34657 2825092 ~ 2825318 (+)
G79485 NA non-coding upstream 41485 2818081 ~ 2818490 (+)
G79484 NA non-coding upstream 42285 2817425 ~ 2817690 (+)
G79481 NA non-coding upstream 43866 2815804 ~ 2816109 (+)
G79517 NA non-coding downstream 10068 2874014 ~ 2875003 (+)
G79540 NA non-coding downstream 13017 2876963 ~ 2877788 (+)
G79541 NA non-coding downstream 14281 2878227 ~ 2878450 (+)
G79542 NA non-coding downstream 15399 2879345 ~ 2880489 (+)
G79543 NA non-coding downstream 16684 2880630 ~ 2881456 (+)
G79309 NA other upstream 392804 2466765 ~ 2467171 (+)
G77695 NA other upstream 1907006 946521 ~ 952969 (+)
G77533 NA other upstream 2150426 708833 ~ 709549 (+)
G80062 NA other downstream 720062 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1200987 4050837 ~ 4065829 (+)
G80845 NA other downstream 1971132 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3192352 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3214616 6075400 ~ 6081684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013419 tmem170a coding NC_007129.7 CM002902.2 22405707 ~ 22414565 (-)