CI01000013_03087239_03094115 (TSNAXIP1)


Basic Information

Item Value
gene id CI01000013_03087239_03094115
gene name TSNAXIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3087239 ~ 3094458 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03087239_03094115.mRNA
ATCTCTTGCCAAGCCTCGTTTCTTAGAGCAACTGGAGTGTCATCTGAAGAGAGAATTAGAAGCTTTAGACACACACGGCCCCAAAGTCCAAGAGCTCAGACTGCAGGTTTACCAGGAGGTCTTTGGCTATTTAATTGAAGAATTTAAAACCTATAAGCCTATTTTGTCTGCCATCAAAAATGAGTATGACATCACATTAGCGCATCTTCGTGAACAGATCAGGGATCTGCTACCACTGCGGGCAAAGCTAGTGCTTGTGTCAGAACAGTGTGATCAGACGATTCTGGATCTGAGAGTGCAGGAAAGAGATGAGATCAGAGCTCTGAAGCAAGAGTGTCAGCGTCTGCAGGACATCATTAAGAGTATGAGAAGACAACAGAGTGCACTACAGATTCAGGTTGATTATCTAAAAGAGGATCTGGCCACCCAGTATCAGCTCTACAGGGATGAACGTGATGCACGAAAGCTGCTCATCACCAGAATCAGCACAATGCACTCTACCCAAGATACTGAACATGATGATAATAATAAAGGTTATAATGAAGAGGTGGAATCTGAGGATCCTATGGTGGTGAAAATGGCTTTGCAGGTGTGTAGAGAGGATCTTACCAAAGCTCAGGTTGAGCTCAACCGCCTGGAAGCAGAATACAGTAATGTCATCCCTCGACGGGAATGGGATAACCTGAATCGTATGCATGAGGAGACTCTAATGAAGCTGGAAACCTTACAAACAGACTTTGACCAGATGAAGTCTGAATATGACATGCTGCTTGAGGTTCATCGCCAGTCAACACCTGCTGTGTTACATTCTAATCAGTCTGTGCTGCAACATGGCTCAGATAACAAACACATTGTAACAACTCCCAGACCAAACTGGGAACAATGTTCAGACATACTCGGAGGCAGTAAGAGATGTAGAGAGCTTTTTGAAGGTCAATCCAGCCAAAAGAAGCTGGAGATCTTGCTGCAGGAGATCAATGGCCAAAAAGAGTTCTTTATTGGACTTGGCACATCCAGTGACGTCCCCATTTATCTACAATATGAGGGAAAAATTAAGAATCTTAAGCTCAAGAAAACAGATGTTATTAGAGTTATAAAAGATATCTGGAGGAACAAAACGAAAGAGAATGAAAAGAACGATATCTCCAGAGACCTGCAGGAGTTTCTTCACAGCTGTCTTGTGGAACAATATACGGATAAGGCAGGAGAGTGGGCTTACAGCTTGATGGAAAGCATCCAAAACAATCTTAAAGATGATTTCATTTGCCTTTTCAATGACATCTTGACTGGGAAGGTTGATGAGAGTATCTACCATGGACAGACACAGCTGCTGTCTCACTTACTCAAGGTTTTAATTCAAAGTGACATAACACAATGCGGATCACTAACTGTCTCAGAATTTAGTGAGGCATTGAAGAAGGCTTTCCCCATGAAGTCAGATCAGGACATAGAGGAGCTGCTGACAACAGCTCAGACAGAGCTTGGGAGCAATGGAGTGCGCATTGCCTATCAGACACTTTATACAGAGGACACAGATGGAAGACACAAAGAATTCCTGAGTCTAGTTAAAAAACAAGCTGCCGCTGAGAGACTCCAGTACATCAGGGAGCTGAGAGTGCAACTGGAAGGCAAAGGGGAAGTGAACGCAGAGCACCTCCGGACTGCCTTCAAATCTATCGATCCCTCACTGGATTCTGAAACTCTGGATTGGTATCTCAGTGTAGCTTTTAAGACAAAGGAGTGTGAATTACAAGATCAAGCTTTGAACACGGAAGTTGTGCTACAGCGTCTCTCTGTGGCTAATGTAAAAAGGGCAGGGCCAGTGTGATGACTGTTGTTACGTCAAGCACATTTCCAATCTTTTTATAGCACAGTACATATATGAACCAAGTACAGCACTAGGGCATAGAAATACCTCTGTGTTAATAGTTTGCATATTGTTATGTAATTGGAAAATCACATATCAGGAATGACACAATATTAAATAATTAAATTAAAATTAGCCTTATGTGTCTGCATTCTGCTTTAAAGTGTCTTTATTTTTGCTTTCTCTTTAAAAGAAAAGAAACTGTCATGCTTGTTATATTGACATTTTACCTCTAAATCAAATCAACAAAGCTATAGTTATTTGTGTTGTCTGCATACAGATTACTTGATAATTGTTTATGTCA

Function

symbol description
tsnaxip1 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

NR:

description
novel protein similar to mouse translin-associated factor X (Tsnax) interacting protein 1 (Tsnaxip1)

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03087239_03094115.mRNA True 2171 mRNA 0.42 14 3087239 3094458

Neighbor

gene id symbol gene type direction distance location
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding upstream 42865 3019688 ~ 3044374 (+)
CI01000013_02859975_02863496 TMEM170A coding upstream 223293 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 269916 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 374740 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 390219 2692443 ~ 2697020 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 26627 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 92185 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 131256 3225714 ~ 3237045 (+)
CI01000013_03241607_03258684 MBTPS1 coding downstream 147149 3241607 ~ 3259203 (+)
CI01000013_03262979_03269729 SLC38A8A coding downstream 168521 3262979 ~ 3269882 (+)
G79601 NA non-coding upstream 39707 3047236 ~ 3047532 (+)
G79600 NA non-coding upstream 73486 3013211 ~ 3013753 (+)
G79598 NA non-coding upstream 75171 3011662 ~ 3012068 (+)
G79596 NA non-coding upstream 80969 3005981 ~ 3006270 (+)
G79593 NA non-coding upstream 89844 2996552 ~ 2997395 (+)
G79625 NA non-coding downstream 18155 3112613 ~ 3113067 (+)
G79503 NA non-coding downstream 97896 3192354 ~ 3194808 (+)
G79639 NA non-coding downstream 107453 3201911 ~ 3202313 (+)
G79909 NA non-coding downstream 271084 3365542 ~ 3365893 (+)
G79976 NA non-coding downstream 279470 3373928 ~ 3374243 (+)
G79309 NA other upstream 620068 2466765 ~ 2467171 (+)
G77695 NA other upstream 2134270 946521 ~ 952969 (+)
G77533 NA other upstream 2377690 708833 ~ 709549 (+)
G80062 NA other downstream 489550 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 970475 4050837 ~ 4065829 (+)
G80845 NA other downstream 1740620 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 2961840 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 2984104 6075400 ~ 6081684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location