CI01000013_03262979_03269729 (SLC38A8A)


Basic Information

Item Value
gene id CI01000013_03262979_03269729
gene name SLC38A8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3262979 ~ 3269882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03262979_03269729.mRNA
AGAGTGATTCAAACAGTGCCAAATATGGAGGAGCTGGCGAAAGAGAGCATCAACTTTTTAACAAAGCCCACGTTGGACACGAGCGGGCCGAAGTTGGGCTCTTTAGGAGCGGTTTTCATCATGCTGAAGTCCGCGCTGGGAGCAGGGCTTCTCATCTTTCCCTGGGCGTTTGCCAAATCTGGAGGAATTCACTCTGCTGTCACTGTGGAAATGGCAAGTAACTCTATTTCTCTTGTGTTCCTGATCAGTGGACTGGTCATCCTGGGCTATTCGTCTTCAATCAGTGGGCAAAACACATATCAGGCTGTGGTCAGAGATGTGTGTGGTCCTGCCATAGGCAAACTCTGTGAGATCTGCTACGTCTTCAATCTTTTCATCATATCTGTTGCTTTTCTAGTCATAGTGGCTGACCAGCTTCAGAAATTGTGTCTCTCTATTTATGAGTTAATCACAGGCTTGCCAGAATCAGAGATGCCGTACCACTGGTACACAGACCAGAGATTTGCCCTGTTTCTCCTGTGTCTCTTCTTCATTTTCCCTCTCTCTGTCCCGAAGGAGATCAGCATACAGAAGTATACTAGTGTTCTAGGAACTTTTGCTGCCACGTATCTCACTGTAGCCATCACTGTGAAATACCACATGAGGCCCGTCCATGAGATCAATCTGTCACCTCTTTACAGCAGTGGAGTAAGCTCATGGGCTTCGATGTTCAGCGTCATCCCGACTATTTGCTTTGGCTTTCAGTGCCATGAGGCCTGCATTGCTGTCTACAGTAGTATGGAGAACAGGAAGTTGTCCCACTGGGTCTTCATCTCTGTGGTGTCCATGTTGATCTGCCTCCTCATCTACTCTCTCACTGCCGCTGGATCGTACGTCAACGGCTCCGCCATATTGTGCGGGGCAACATGCCGTAACTCTCATAAGTGGACTGAAGAAAAGATGCCTGACTATTTTGAGATTTTACAAACTGTCGCACAATCCAAACCTCATGTCGGGGAATTACCTTTCACATATGAGGACTATTTTGTAGGAGTCTTTGGGTACCTGACGTTTGGGAAGAACGTTGCTCCTGATATTCTGATGTCGTACAGTGGGGGTGATGTGACCATAATCATTGCCAGGCTGCTGTTTGGAATCTCAATCATCACCATCTACCCCATCATTGTCTTGCTTGGAAGATCTGTGATCCAGGATCCACTGCTGCGGCAGCGACACAAACACACAGCGGTGACAGCGTCTTACGAGAGCCGTACCCGTGTTGCCTTGACCACAGCCTGGGTCACAGTCGCTCTTCTCATAGCAGTGTTCGTTCCAGACATCAGCAAAGTGATCAGTGTTGTCGGGGGAGTCAGTGCCTTCTTCATCTTTGTATTTCCAGTCAGAGTCAGTTTCTCCTACACTGAGATATCTTTTGATTGCATGGGGAATGATCACACTTTTCTGTGGTACCTATATCTTTGGGCAGAGTACTTCAATTGCGATTATGCAACTCCTAAGTGAAATTTAATTTTTTGTATGATACTGTTCAACACAAGGATTTTTAACTGTATGGTCTTGCATAATTTTAGACACTGCTCCAATACTTCAAGTGAGGAATTATTCCTTGTAATGGAGATCGTTGTACAAATGTTGAAATGAAATACCTCAGACAAA

Function

symbol description
slc38a8a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A8 (solute carrier family 38 member 8).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03262979_03269729.mRNA True 1653 mRNA 0.46 11 3262979 3269882

Neighbor

gene id symbol gene type direction distance location
CI01000013_03241607_03258684 MBTPS1 coding upstream 3776 3241607 ~ 3259203 (+)
CI01000013_03225714_03236717 FAN1 coding upstream 25934 3225714 ~ 3237045 (+)
CI01000013_03186643_03190449 NRN1LA coding upstream 72302 3186643 ~ 3190677 (+)
CI01000013_03121085_03147061 EDC4 coding upstream 115357 3121085 ~ 3147622 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding upstream 168521 3087239 ~ 3094458 (+)
CI01000013_03457529_03463949 PNP6 coding downstream 187647 3457529 ~ 3465011 (+)
CI01000013_03477151_03488842 CALB2, CALB2A coding downstream 207158 3477040 ~ 3489333 (+)
CI01000013_03493064_03499971 GOT2, GOT2A, GOT2B coding downstream 223182 3493064 ~ 3500131 (+)
CI01000013_03501267_03503856 NA coding downstream 231385 3501267 ~ 3504388 (+)
CI01000013_03505522_03510594 NA coding downstream 235640 3505522 ~ 3510717 (+)
G79639 NA non-coding upstream 60666 3201911 ~ 3202313 (+)
G79503 NA non-coding upstream 68171 3192354 ~ 3194808 (+)
G79625 NA non-coding upstream 149912 3112613 ~ 3113067 (+)
G79601 NA non-coding upstream 215447 3047236 ~ 3047532 (+)
G79600 NA non-coding upstream 249226 3013211 ~ 3013753 (+)
G79909 NA non-coding downstream 95660 3365542 ~ 3365893 (+)
G79976 NA non-coding downstream 104046 3373928 ~ 3374243 (+)
G79994 NA non-coding downstream 120063 3389945 ~ 3390326 (+)
G80003 NA non-coding downstream 141613 3411495 ~ 3412005 (+)
G80058 NA non-coding downstream 260553 3530435 ~ 3530847 (+)
G79309 NA other upstream 795808 2466765 ~ 2467171 (+)
G77695 NA other upstream 2310010 946521 ~ 952969 (+)
G77533 NA other upstream 2553430 708833 ~ 709549 (+)
G80062 NA other downstream 314126 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 795051 4050837 ~ 4065829 (+)
G80845 NA other downstream 1565196 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 2786416 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 2808680 6075400 ~ 6081684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013408 slc38a8a coding NC_007129.7 CM002902.2 21622414 ~ 21640389 (-)
bowfin (Amia calva) AMCG00020384 NA coding CM030127.1 CM030127.1 17597133 ~ 17610083 (+)