CI01000013_05436977_05445492


Basic Information

Item Value
gene id CI01000013_05436977_05445492
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5436977 ~ 5445492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05436977_05445492.mRNA
GAACTACGTGTCCGAAGCAGCTGTTGCTGGGGGATGCTTTTACGAGGACACAAAACCGGACTAGGTTCTGCCATGGCAGATGGTGTGGACCTCAGCCGAAAGTTTGTGTCAGAGTCTGAACTAGACGAGAAAAGGAAAAAAAGGCAGGAAGAATGGGAGAAGGTCCGCAAGCCAGATGACCCGGAGGAGGCCCCTGAGGAGGAGTACGACCCTCGATCTCTGTTCGAAAGGCTACAAGAGCAGAAAGACAAGAAACAGGAAGAATATGAGGAGCAATTCAAATTCAATCTTTCAGATGACATACATCACACGGTCTCAGGGGGCTTGCCTCTCCCATCTTTATTTGACCTCATTTTGGGGTTTATCTGTCACCGTTTGTGCAAAAACATGCGTGTGCTTGCATACACATGCGCTGGTGTGTGTTTGAGCATGTCGGTGGGTGTCTATGAGTGTGAACAGATGGGAGTGATGGAGATCAAGAGCAGGTCTGTTCTTGCGGAGAACATGGTTAAAGGCCTGGATGAAGACGAGACCAGCTTTCTTGACGAAGTCTCTCGGAAGCAGTCTCTAATAGAGAAACACAGACGGGACGAGGAAGCTAAGGAGATAAAAGAATACAGGATATCCTTTTGCACCTTAAAGCATTCTGTCTCTACGTTCACCTTCGTTAAGCTGGTGGTAGAAGCTTCAGCTGTCAAGCGCAATGATGGCAGTGAACCTCACAGTGCTCTGCAGAAGCTGGCAGCCACCGAGAGTCAGAAGAAGGAGCCAGAGAAAAAGGCAGGAGCCAGACCCTCAGAGCACAGGACCAGTCACCTGTCTCAGGCCCACCTGCTGGCTGGAGCAGTGAAACGACGCAGCTCCTCTCAGTCCTCAGAAGGGAGTAAAAAGCAGAAAGCAGAGGAGACGGTAGCCGGCAATGGCAGTCAGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05436977_05445492.mRNA True 934 mRNA 0.51 8 5436977 5445492

Neighbor

gene id symbol gene type direction distance location
CI01000013_05402289_05403494 NA coding upstream 33050 5401587 ~ 5403927 (+)
CI01000013_05262407_05267780 NA coding upstream 169012 5262129 ~ 5267965 (+)
CI01000013_05246618_05251189 NA coding upstream 185667 5244794 ~ 5251310 (+)
CI01000013_04989803_04992613 NA coding upstream 444089 4989534 ~ 4992888 (+)
CI01000013_04950930_04976334 LONP2 coding upstream 460267 4950930 ~ 4976710 (+)
CI01000013_05572116_05579830 BBS2 coding downstream 125848 5571340 ~ 5580139 (+)
CI01000013_05583328_05584677 B3GNT9 coding downstream 137836 5583328 ~ 5584704 (+)
CI01000013_05607381_05608529 FOXL1 coding downstream 161391 5606883 ~ 5608570 (+)
CI01000013_05636898_05637901 NA coding downstream 191255 5636747 ~ 5638084 (+)
CI01000013_05698947_05741884 ZFPM1 coding downstream 253455 5698947 ~ 5741884 (+)
G81250 NA non-coding upstream 157039 5279573 ~ 5279938 (+)
G81186 NA non-coding upstream 205560 5203982 ~ 5231417 (+)
G81187 NA non-coding upstream 242290 5194269 ~ 5194687 (+)
G81184 NA non-coding upstream 244400 5192370 ~ 5192577 (+)
G81175 NA non-coding upstream 258919 5177759 ~ 5178058 (+)
G81380 NA non-coding downstream 45566 5491058 ~ 5538944 (+)
G81306 NA non-coding downstream 67800 5513292 ~ 5578648 (+)
G81404 NA non-coding downstream 169412 5614904 ~ 5615250 (+)
G81408 NA non-coding downstream 172334 5617826 ~ 5618111 (+)
G81411 NA non-coding downstream 176191 5621683 ~ 5625346 (+)
G80845 NA other upstream 600745 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1371148 4050837 ~ 4065829 (+)
G80062 NA other upstream 1852193 3584008 ~ 3584784 (+)
G79309 NA other upstream 2969806 2466765 ~ 2467171 (+)
G77695 NA other upstream 4484008 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 610806 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 633070 6075400 ~ 6081684 (+)
G81994 NA other downstream 1890453 7335945 ~ 7338239 (+)
G82168 NA other downstream 2582846 8028338 ~ 8041343 (+)
G82581 NA other downstream 3883837 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G141531 NA non-coding NC_053125.1 CM020922.1 6376026 ~ 6378373 (+)