CI01000013_05698947_05741884 (ZFPM1)


Basic Information

Item Value
gene id CI01000013_05698947_05741884
gene name ZFPM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5698947 ~ 5741884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05698947_05741884.mRNA
TCTATTGGGGATCTTAATGGATGTGAGGATCCATCTGATGATGTAAGCATGTCAGGAGAGGAGGGCGGAGCTTCAGACCAGGAGGACTCTGCAGAGTGTGACGGTTCAAGTCCACCTTCATTTACACCACTTTATAATGAAGAGCCAAGAACGCATGAGTCCCTGGCGGTGCCGGATGAGGGTGAGGAAGATGAAAAAGGACTGAAACGCTGTGCAGAAGATGATGAGGAGGATGAGGAAGAGGCAGATGGGGAAGGGGAACCCCAGTGGAACGGCCCAGATGATCTTATGCTAAGCGGCAGTGCTGATGACTTCAAGGTCCTGGCCCTCAGGGATCTGTCAGGTGACACCGTGTGGGGTCCTTTTTCTGGCAGCATCCAATCAGGAGAGACCACAGATGGACCTGCCAGTGAGAGCCCTGTAATGTCTCTGAAGTGTGAGGAGGCAGACTGCTGGCTCAGAAGAATTCCTGTGACCTCAAGCCTCACCGAGTCAAACTGCACCATCTACAGTCAGGGAGGAGCGTTATTCTGTAAGCTGACACAGGAGCTGTCCAGTGGAGATGCACTTCTGGCAACGCTGTCCTGCTCCACAGCGGAACAATCGGCAGCAACTCAGACCCACGGGGTGCGAGTGAAGGAGGAGCCTGCGTATCCCGCCGCTCTGCATTCTGAGATCCAGCTCCTCCCACAACAGGCTGGCATGGCTGCCATCTTAGCAACTGCTGTCGTTAATAAAGACATTTTCCCTTGCAAAGACTGTGGGATCTGGTACAGAAGTGAGAGGAATCTTCAGGCCCATCTTATGTACTACTGCGCAAGCCGACAGAAGCAGCAGACTGCTGCCTCTCCTCCACAGGACAAGCCTAAAGATTCCTACCCTAACGAGAGGTTGTGTCCCTTCCCGCAGTGCAACAAAAGCTGTCCCAGTGCCAGCTCTCTGGAGATCCACATGAGAACACACAGCGGAGAGCGTCCATTTGTGTGTTTGATTTGCCTGTCAGCATTCACTACTAAGGCAAACTGTGAGCGGCACTTGAAGGTTCACACAGACTCGCAGAATGGTTTGTGTCATGGCTGTGGTTTCATCTCCACAACGCGAGACATCCTGTACAGCCACCTGGTCACCAGTCACATGGTTTGCCAGCCTGGCTCTCACAGTGAGGTGTACTCACCTAAACTACCACTGGCTGGAGGCTTGAGTCCAGGGGACTCTGGCATTGTTCTGAAATGTCAAGTGTGTGGCTACTCTGCTGACACACCTGCCCTACTCCAGCAGCATGTCCACACTCACCTGGAAGTGAGGGTTCCAGCTGAGAGGAGCCCCACGCCTCGCCAGAGCAGTCCTACTTCCTCTGAGCTCCAAGACCCGCAAGAGAGGGAGCTTGATGCCTGCGTCCCACGTCCCGACTCTTCCAGCCCAGGAGCCAATGGCAGCTCTGCCTCTCAAGGCTGCAGCCCCCTCAACCAACTCATCATCAAAGAGGAGCCACGTTCAGACTATGAAAATGATACAAAGGAAGAAGAACAGGTGGGCAGTCCTCAAGGAAATGCTGTGGAGGAAAGCTCATCTCAGTCTACTTCACCTAAGAGCCCCACGGTGGTGGCGGTTAAGACAGAGCCGACCAGTCCCACACCAGGTTCCAGTCCCGCACACCCTGGAACAGGGGGTTCGGTTCTATCTGGAGGGACGATGTTCTTACCGCAGTACATGTTCAATTCTGAGGCTGCCATAATGCCACAAGCGTCTGAGATTCTGGCTAAGATGTCTGAAATGGTACACAGTAGGCTTAAACAGGGACAAGGGCCAGCAGCCGGACAGCAGAGCTTCTATCCACCAGGCTCTCCTGCCAGCGTTCAGAAGGGAGCCACTTGCTTTGAATGTGACATTACCTTCAACAACATCAACAACTTCTACGTCCACAAGAGGCTTTACTGCTCAAGCAGGCATCAGCAAGGAGAGGCAGCAGGCCTGATGAAGGAAGGAGCGGTCACTGCAGCTGCTCCTCCTGCTGCCCACGCTGCTTCACCCCAGGCCAGACCGGTCAGTCGTGCGGCTTCGGCCTCTCCTAGCTACCCCGACCCTGCAACAGGAGGCACAGCCTCTGAGCCCAAGTTAGTGGAGGTGAAAAGTGAGGATCCAGGGATGAAAGATGTCACCTGCTCGTCGTCCTCAGAGGGAGAGGGACCTGGGGGTGGGCAGGCCAGCGAGGGTAGCCAAAGTCCTAGTGGCTCCGCCGACGACACAGACGACGATCCCACTCGCACCTTCTGCCAGGCCTGCAATATCCGCTTCAGTCGTCACGATAACTACATTGTCCACAAGCGATTCTACTGCGCCTCGAGACATGATCCCTCCAACCAGCGACCCCATTCTGGCAAGACCGCCTTCCTTCCCCAACCTATCCGCACACGCAAGCGCAAGAAGATGTATGAGATCCACATGGCTCAAACCGAGGCTTTGGCTAATGCCACTGCTTTGCCGACAGCAGCAAGTCTGGGGGTGAAACAAGAGGGCCCTTCCATTCCTCCATTGCCCCAAGTGTCCACCCCAACACAAAGCTCAAGTCCTGAAGGCGACGGACCCATTGACTTGAGTAAAAGACCCCGACTCAGAGAAAGCCAGAGTGGGGGCAGCATTCCCGCTCTGCCCCTTGCTGACTACCACAAGTGCACCGCCTGCAGCATTAGCTTCAACAGCATAGAGAACTACCTGGCCCACAAGACCTACTACTGTCCGGCAACTACCCTGCAACCACACACTATGGAGCAGCTTAACCGGCTAAAGAGACCCGCTTCCACCTCACCGAAGAACCGAGCTGTGGACCTGCACCCTGAGGCCAAAGGGCTTCAGACAGGTAAAACTGCAGCGGTTGCGCATCCATCCACCTTGCTTGGCTCTGAATCCACCCCTCCACATGTGCAGGGAGCAAAGACCCCAAGCACCTCCCCAGTAGTGTGTCCCTACTGCCCTCCCAACAAACTGCTAACCTGTGATCTGATGGAGCATTTTAAAACGACTCATGGTCTGGTGCTCACACTACAGCAACATCTTGAGACGCAGTCCGCTGGAGTCAGTCCCAGTCCTAGCCTTAGCCCTCGGGAAGGAGCTCCTCTCACCCCTCCTAAACCAAGCCCTCGGCCCCGTAAGGACAGTGTGAATGGCCGGAGCATCAAGTTGGAAGCAACCTCTCCTTCCTCACCTGTACTTAATGGAAGTCCACTAGAACCCCAGTCTGTGGGGTCTGGCTCTCCAAAAACCGCACCCCCTGCCCTCTCCCCTACAGGAGTAACTGTATCACCTGTGCCTGAAGCGCTAAGAGAAGTTGGGCAGCTAGGCCACACCCCATTGCCCGCACTCCTCCCTGAAAAGGCGGTCCTTGCTATAAGCCACGCCCACACAACTCCACCCATGCCTAAAACACCCCTCGCCTCACCCCTGCAGAATGGGAACACACGCTACTGCCGGCTGTGTAACATCAAATTCAGCAGCCTTTCCACTTTCATTGCACACAAAAAATACTACTGTTCCTCTCACAGTGCCGAACATGTCAAG

Function

symbol description
zfpm1 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Acts upstream of or within heart looping and hemopoiesis. Predicted to be active in nucleus. Is expressed in several structures, including intermediate cell mass of mesoderm; lateral plate mesoderm; myeloid cell; otic vesicle; and pericardial region. Orthologous to human ZFPM1 (zinc finger protein, FOG family member 1).

NR:

description
friend of GATA-1

GO:

id name namespace
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K17441 ZFPM1, FOG1; zinc finger protein ZFPM1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05698947_05741884.mRNA True 3555 mRNA 0.55 8 5698947 5741884

Neighbor

gene id symbol gene type direction distance location
CI01000013_05636898_05637901 NA coding upstream 60863 5636747 ~ 5638084 (+)
CI01000013_05607381_05608529 FOXL1 coding upstream 90377 5606883 ~ 5608570 (+)
CI01000013_05583328_05584677 B3GNT9 coding upstream 114243 5583328 ~ 5584704 (+)
CI01000013_05572116_05579830 BBS2 coding upstream 118808 5571340 ~ 5580139 (+)
CI01000013_05436977_05445492 NA coding upstream 253455 5436977 ~ 5445492 (+)
CI01000013_05808968_05845757 NA coding downstream 67084 5808968 ~ 5846518 (+)
CI01000013_05847899_05849819 NA coding downstream 106015 5847899 ~ 5850194 (+)
CI01000013_05851074_05870330 TANGO6 coding downstream 109190 5851074 ~ 5870870 (+)
CI01000013_05878375_05880680 HAS3 coding downstream 136491 5878375 ~ 5881372 (+)
CI01000013_05885911_05904644 TPH2, TBC1D15 coding downstream 144027 5885911 ~ 5905150 (+)
G81322 NA non-coding upstream 26702 5657536 ~ 5672245 (+)
G81412 NA non-coding upstream 68519 5629630 ~ 5630428 (+)
G81411 NA non-coding upstream 73601 5621683 ~ 5625346 (+)
G81408 NA non-coding upstream 80836 5617826 ~ 5618111 (+)
G81404 NA non-coding upstream 83697 5614904 ~ 5615250 (+)
G81421 NA non-coding downstream 6902 5748786 ~ 5749042 (+)
G81608 NA non-coding downstream 19475 5761359 ~ 5761564 (+)
G81615 NA non-coding downstream 26415 5768299 ~ 5768506 (+)
G81616 NA non-coding downstream 26901 5768785 ~ 5768985 (+)
G81628 NA non-coding downstream 37123 5779007 ~ 5790695 (+)
G80845 NA other upstream 862715 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1633118 4050837 ~ 4065829 (+)
G80062 NA other upstream 2114163 3584008 ~ 3584784 (+)
G79309 NA other upstream 3231776 2466765 ~ 2467171 (+)
G77695 NA other upstream 4745978 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 314414 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 336678 6075400 ~ 6081684 (+)
G81994 NA other downstream 1594061 7335945 ~ 7338239 (+)
G82168 NA other downstream 2286454 8028338 ~ 8041343 (+)
G82581 NA other downstream 3587445 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020632 NA coding CM030127.1 CM030127.1 27007867 ~ 27018076 (+)