CI01000013_05851074_05870330 (TANGO6)


Basic Information

Item Value
gene id CI01000013_05851074_05870330
gene name TANGO6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5851074 ~ 5870870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05851074_05870330.mRNA
ATGGACGCACACTATTTTCCAGAGGCTCAATTGAGCAATGGGCAAAGCCCACAAACAGCACTTGTGTCGGCTCTACAGAGGAACCTGTCAGAGCTTCGGGAGCGCATGTCTGGAGACGAAGAGCTGGAGGAAGCCCGACATCTTCTGGAGGAGGTCAGAAGAGACATCACATGGTTTTGCAGTGATACTAATGACCTAACCTGGAGCTTTGTCCAGGAATGTCTGCTCTTACTGCTCTGCCTGGCACGTCACTTCAACCGCCTCCTAGAAGCCTTTCACCAGATTCCTGCTGTGCCAAATCCTGCAACTCCCGAAGCAGCTCCACCACTTCCCCCAGATGTTCTGAGTGTGGCCCAACAAAAGACACTGGGCACTGTGCTGCAGTTTGTGGTCACACTGGGTCTCTGCCCATATTTAGCTCCTGGTGTAGGGGTGGCACTGGGGCTGAGGTCAGCCTTTGGGGCAGCAGTGGAGGGGGCAGTCCGACACGATGTGGCCCCTGCAGGGGAACGCCGTCTACTTATCACCACTAATGTGCTCCTGGAGGTGTCTGCACTGTCATCACTAGCTACTCCTGTGTTTACACGCCACCTAGGTGACATCATGGCAGCTCTGTGTCAGTTAGCTTATCGACCCCAGCGGCCTGAAGGAGATGGTACAAAGGGCAACAAGAGGCAAATCTTTTATAAAATTAATAAATCCATATACAATAATAAAGAACGACATGAAAATTCATTGGGACTGACGGTGGAAGAGCGCAAGACCTGCAAAGAAGCACTCCACAGTCTTCTTGGGAAAGTGTATCAGCCAATCGTTATCAAAGAGCTGCTTGTTCTGCAAGGGGGTCCTAAACAGGCATGTTCAGGTTCCAGAGGCGGATGTGCTGGAGGGGGAGGTAAGGCTCTAGCCCAAGCTCCCCCATGGCTGAGGCGCCTGTGTGGACAGTTGCTGTCTGACAGGTTAATCCAACCACAAGGCGTCCAGGCAGTGGTGAGGGCCATCTTAGAGGGCACCGGAGGTGGCGACTCTGACTGGAGGAAATGTGATGCTGTGGCAAAGATTCTTGCCGCTTGTCCTCAGCAGTCCCTCTCTGCTGAGAGCTATTACAGTCAAGTGTGTCCACAGGTTCTGGAGCTTCTGCATTTCAAAGACAAGCTGACTGCACAGCAGTTCCAGAGAGTGGCCACCAGGGCGGCACTCATCATGGTGCAAGATCGCCCTGAGTTTGCGCAGCGATTCCTGCTCTTTCCTCTTCTCTCCCCCCTACGTCGCTGTGCACAGGGAACTGGAGATGATCTATCCCAGGATACAGTGGAGGAGTGGGAGCTGACTCGCTGTATTGAGGATGTATATAAAATTTGTGTGGTGGGTAATAATCCATCAGAAGTGCTGCTGAAAGCTCTAGCAGATGTCATCTCAACACTGTTCAATCTTTTTTGCTTCACCAAACAGAATGTCTCTCATTTACGTACATCTTGTCAGGAGATCCTGATATGGTGCCTGTCTCACTCAGAGCGCTCAGTAGCTCTTTTGCTGCTGAAACGCTTGTGTGGACTGCTGGGAGAAGTAGGTGGAGTCAGACACGGCTTTCAGTTCTCACCTGGCAGTGAAGGAGGGGCCAGACTTACAGTGAGAGAGCTTATCAGTGATGAAGATGATGCCCTGTATGAGAAGGTCTCAGGTGAGCAGTGGAGAGTCCAGTGTCTGGTGGAGTTATTGGGAGAGATGAAGGACAGTGACCTGCCTGGAGAGTTTTTCCTACTGCTGCTGCAGGATTTAACAGCTGTGGCTGCTGAGCAGGATGAGGTTGAGCAGGAAGTGGACACCTCATCTATGACCCTGCTGGAGTTAGAGCAGCACCTGCTGGGGCGTGCAGGGCACATGTATGAGCCTCTTATGGCTGATATAGCACAGTTGTGTTATATCAGCAGTTGTGCTACTTTATGTAGTGATAAGGTGGTTGGGTTCATAGCGTCCATGCTGCAGAGAGCATGTGTTAGTCTGGAGCATGGCACTGACAGCCCAGTGGAGAGTCAGACTCTCAGTATGGGAATGGGGCTTGTGGCCACTTTACTCTCTGGAGCTGCTGAGCTCACTGCAGATGATTATTCATCAATGGCTGCACTGCTGCCCCACCTGGAACAGATTTCCCAGCAGCACCAAGAGACAGTCATCCAGGAGCTGGCGTCCGATCTGAGGGCCACTATTGCCACACACGGGGCATATCACCCAAAAACTGTTCCCAAAACAGCCAGCCAGCACAGTACTACTACCCACAGTCCTGCTCAACCTGCAGGCCACAGTTCAAACTCCCTCCCAGCCAGAGCCCAGGTCCCCTCACAATCAATCTCACATCCCAAACATAAAACAGACCCTAGTGTAACACCCAAAGTTAAAGACTTTCAGACAGCTGGAAGAATACCCAATCCTGGGATTTCGGAGTCCTCACGCAGTAAAGCTTTCTCTGAGTGCCTGCTGGAAGCCTGTGACCCAGATGTGCCCACACGAGCCGTAGCACTGCGTTCACTGACCCGCTGTGTTAGAGATGGAGACAAGGAGGCATTGCAGAACAAGGAGAAACTACTAACACTCTTTCTGGAAAACCTGGAACATGAAGACTCCTTTGTGTATCTGTCTGCCATTCAAGGGTTGGCTGTGTTGGCTGACTCTTTTCCTGAGCAGATTCTGCAGAGACTGCTGGGAGAGTATCAGACCGGGGCAACTGTCTGTCCCCCCAAAAGAGAGCGCTCCCTAGAGACACGCCTCAAAGTGGGCGAGGTTTTAATGAGAGCCTGCAGGGCCATGGGTGACCTTGCTCCTCACTATGGTCGGCCTTTGATTGGTGTGTTCCTGAGCGGCACACGAGATGAGGACAGTAGTGTGCGTGCCAGCAGCCTCTCTAATTTGGGTGAACTCTGCCAACGTCTCAACTTTTCCCTCGGACCACTGGCACAAGAGCTAAGCACGTGTCTCACCGCCCTGATAAAGACGGACAGAGAAGCAGAGGTTCGGAGAGCTGCGGTCCATGTCATTGCTCTGGTTCTTAGGGGCCTCAGTGATAAAACAACTCAGTTTTTTGAGAAACCTTCTATGAAGTTTTATGTATCACAAGTTCAGAGTTACAGCTGTAACTACATTAACCAATCAGAGGTTCTTGGGGATGTTTTGTTGGAGCTGTATCGGGCTCTGAAGTGGGTGGTGCGGTCGGACCCAGATGATGTGGCTGTACTCCATGCTCAGCTGGCTCTGGAGGAGCTGGATGATGTCATGAGGAGGTTCATCTTCCCTCAGCAAAAACTTGAGAAAAAGATTGTGGTACTTCCTTGAAAGCGCTCTGGGAGTTACACAACATTTTTGTAGAAAGAGGATTTCCATCTGTAATTTATACATTTTTTTTTTTTCTTCCCCATAATCATTTTTCACTCCCATATTTCCATTTTCAAACCAACAAAAACCTGGCTTGCCATTGATAAACTAGCATTGTGCCTTTTGTTATCTGGTACACTGAGGTTAGAGGGCACCAAAAGCACAAGATATATTTGTGTAAAGAGCCCTGCAGTAGCTGGTTTCCACTCTGTTCTGCACTGGTGATAAAATGCCTGTTTGCTTTTTATCGAATGTTTGTGGTACATATAAAGACGGCTAGGTCATGACATCATTGTAAGATACGACAGGGCAATTAGTCATTCTCTTAAAATTCCTCCCACTGCACAATACTAAAACTTTCCATTCATGTTAACCGTCTCTATGGCATCTTGACCTCTTGGGTCTGCCCTGAAGCAGAGCTGGTTAAATACCATATAAATACAAATGTTAGCATTTATGCTAACTCATAAAATGGTAATTTGGTCAAGAGGTGTCTCTAAA

Function

symbol description
tango6 Predicted to be involved in protein secretion. Orthologous to human TANGO6 (transport and golgi organization 6 homolog).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05851074_05870330.mRNA True 3867 mRNA 0.50 20 5851074 5870870

Neighbor

gene id symbol gene type direction distance location
CI01000013_05847899_05849819 NA coding upstream 880 5847899 ~ 5850194 (+)
CI01000013_05808968_05845757 NA coding upstream 4556 5808968 ~ 5846518 (+)
CI01000013_05698947_05741884 ZFPM1 coding upstream 109190 5698947 ~ 5741884 (+)
CI01000013_05636898_05637901 NA coding upstream 212990 5636747 ~ 5638084 (+)
CI01000013_05607381_05608529 FOXL1 coding upstream 242504 5606883 ~ 5608570 (+)
CI01000013_05878375_05880680 HAS3 coding downstream 7505 5878375 ~ 5881372 (+)
CI01000013_05885911_05904644 TPH2, TBC1D15 coding downstream 15041 5885911 ~ 5905150 (+)
CI01000013_05927503_05928295 NA coding downstream 56361 5927231 ~ 5928559 (+)
CI01000013_05939966_05944534 ZNF143B, ZNF143 coding downstream 69096 5939966 ~ 5944658 (+)
CI01000013_05947579_05951579 WEE1 coding downstream 76709 5947579 ~ 5952609 (+)
G81630 NA non-coding upstream 58373 5792238 ~ 5792701 (+)
G81628 NA non-coding upstream 60379 5779007 ~ 5790695 (+)
G81616 NA non-coding upstream 82089 5768785 ~ 5768985 (+)
G81615 NA non-coding upstream 82568 5768299 ~ 5768506 (+)
G81608 NA non-coding upstream 89510 5761359 ~ 5761564 (+)
CI01000013_06050285_06059640 NA non-coding downstream 157739 6049864 ~ 6060269 (+)
G81679 NA non-coding downstream 159322 6030192 ~ 6032642 (+)
CI01000013_06076169_06080164 NA non-coding downstream 207692 6075400 ~ 6081684 (+)
G81672 NA non-coding downstream 212604 6083474 ~ 6084895 (+)
G80845 NA other upstream 1014842 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1785245 4050837 ~ 4065829 (+)
G80062 NA other upstream 2266290 3584008 ~ 3584784 (+)
G79309 NA other upstream 3383903 2466765 ~ 2467171 (+)
G77695 NA other upstream 4898105 946521 ~ 952969 (+)
G81994 NA other downstream 1465075 7335945 ~ 7338239 (+)
G82168 NA other downstream 2157468 8028338 ~ 8041343 (+)
G82581 NA other downstream 3458459 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013340 tango6 coding NC_007129.7 CM002902.2 17032312 ~ 17075098 (-)