CI01000013_05885911_05904644 (TPH2, TBC1D15)


Basic Information

Item Value
gene id CI01000013_05885911_05904644
gene name TPH2, TBC1D15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5885911 ~ 5905150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05885911_05904644.mRNA
GCACGTGAGCGGTGCTACGTCGTCTATTTAGCAGTCGACATGGCGGCTACAACTCCTCCCAAGGTGGTGTTTGAACACGAGGGAGTCTTCATTCACTCATCTCCAGATGAATCTGAGGATCAGGATTTAATATCAGGGTTCCTCAGGATTGTTGATAAGGATGGTGAAACCCTTGTGGAATATAAACCCCTGGAGGATGCAGATCCCTCAAACATACTGTGTGCCTGCAAGGACTCCAGCTCAGTGGTGGAATGGACTCAGAGTTCAGAAGACAACCCTCGTCGTCCTGTCGACCATCAGCTGAGCTATGAAACCGAGTGGGACATGATCAATGCTGTCTCATTCCGGAGAAAAGCCCACACACATGGAGATGGTGGATCAAGCCACGCAAATGACCGGAACAAGTGGGCCTTCTCTTTTAATGTGTGTGACCTCAGGTCTATCACAGTCAAATGTGAGGGCTGGTCATACATCATTTTCCGCTTGAAGGATGGCACAGCACTGCCAGCTATTCATTTCCACCAGGGAGGGAGCACAGCATTCCTGGATAGCCTAAGGAAATCAGTTCAGATCAACGAGAGTCCCGATGATGACAGTATCTTGATTGTCAGCACTTACAGCAAAGCCTTCTCGCAGTCCTTTGAGAATCTTCTGGATGATACAAACTATGGCTTTGTTCAGAAATTCAAGAAAGATCCTTATACAACAACACTGGGTGGCTTCTCCAAAGTCACTAACTACCTCTTTGACGCATTTCGGGCGCCTGAATTAGAGTGTCAGCAGCGGCCTGCTGAGGAGGTGGCTGATCTGTTGGGAGAACTCATTCCCGGACTAGAGATTAACCAGCAGGAAGAGCCTGGATTTGAAGTCATCACCAGACCTGATCTGGGACCGAGGCCAGAGGTGCAAAGGAGGGGGCCGGTAACAATGGAAGAATGGGAAAAGTACCAGGACTCAGAGGGAAGAATGACCAATGTACCTCACATAAAGGATGTCATATTTAAAGGGGGTCTTTGTTACGCAGTGAGGAAAGAGGCTTGGAAGTTTTTGCTTGGCTATTTTCCATGGAACAGCACTCATGAAGAAAGGAAGCTCCTGCAAAAGAGTAAAACTGATGAATACTTCAGAATGAAGCTCCAGTGGAAGTCAGTAAGTGAGGAGCAGGAAAGGAGAAACTCAAGGTTACGAGATTACAGGAGCCTGATTGGGTACGTACAGGGCATGAGTGACCTGCTCTCTCCCATCCTCTTTGTGATGGAGAATGAAGTGGATGCCTTCTGGTGCTTCGTTTCCTTCATGGATGAAATGCATGAAAACTTTGAAGAGCAGATGCAAGGGATGAAGACACAACTAATTCAGCTCAGCACTTTGCTTCGGCTGCTAGATCTGGCCTTCTGGAACTACCTAGAGGCACAGGATTCTGGGTACTTATATTTCTGTTTTCGCTGGTTATTGATCCGATTCAAGAGAGAGCTGCATTTTCAGGACGTCCTTCGCCTTTGGGAGGTTATGTGGACCAGACTGCCTTGCCAAAACTTTCACCTTCTGGTGTGCTGTGCCATTTTAGACTCAGAGAAACAAAAAATTATGGACAGAAAATATGGATTCAATGAAATCCTGAAGCATATAAATGAACTCTCCATGAAACTGGACATCGAAGAAATCCTTAGCAAATCTGAATCTATCTGTATGCAGATAAAGAATTGTAAGGACTTGCCCCATTCAGTGAGTGAGATTCTGGGTCTCAACACAGTCACTGAACCCTCTGCAGCATTAGAAACCAGTGAATATGGAATACTCGAGTCACCTCAAACCTCACCAAGATCCTCACACAGACAAGATCACGTCGTCTCCAACGGCCACAGCCATCTAAAAGAAGCAACACACAACGGCTGCAAACTCCCTTTCATTAAAAACAGCAGCATTTTGTGCACTGACAAACGTGCTTATTCACCAAAACCCATAAACAATATGCATCTGTCCTCAAAGGAGGTCTTGGACGAGTCGACATTTCCTAATGGAAGAGCCATCCCCTCAAAAGCCAATATGAGTGATAGCCTACCCCGTGGAAAGAAGACATCTCAAGAGACAGTAACTATGTCCTCTGAACTACAAACTAATGCGAAGGGGCCGCAGACAGCCCCTAAATCACCTGTTGGGCTACTTAGGAAGAGGGGTCAAGAAGCAATTCCGAAGATGCAACCTGCTATGATGATGTTCTCCAGCAAATACTGGGCTCGGCGAGGACTATCTTTGGATTCTGCAATGTATGACCAACAACACCTTGCAACCTCAATGCTCCGCAGGACATCCTTTAATCGGATAGATGAAAGACCTGACAAAGAGGAACAGAAATCCACCTATGACCTTGGGAAATTAGCAGTGATTTTCTCACTGAAGAATGAAGTGGGCTGTCTGGTGAAAGCGCTAAGACTCTTTCAGGAGAAACATGTGAATTTGGCCCACATTGAGTCTCGCAGATCTAAGAGAGTCACCAATGAGGTGGAGATATATGCGGAGTGCAACTGCACAAAAAAAGAGTTCAATGAGCTGGTGCAGCATCTGAAAGACCATGTCAACATTGTCTCTTATAACACACCTCAACAAGTGTGGTCTGCAGAGACTGACTGTTTGGACTGTGTGTGCGTTTTGGGAGGATTGCCAGATGGGGAAGGAATACCATGGTTTCCCCAAAAGATCTCAGAGCTGGACCAATGTTCTCATAGAGTGCTAATGTACGGCTCAGAACTGGATGCTGATCATCCGGGCTTCAAAGACAAGGTGTATAGGCAGAGGAGGAAGTACTTTGTGGAGGTTGCAATGAACTATAAATTTGGGCAGCCCATCCCACGAATAGAGTACACACAGGAAGAAGTGAAGACATGGGGAGTCGTTTTCAGAGAACTTACAAAACTCTATCCAACTCATGCCTGCCGCGAGTACTTGAAAAACCTCCCTCTTCTCACAAAGCATTGTGGGTACAGAGAGGACAACATCCCACAGCTGGAAGATGTGTCTCTGTTCTTACGAGAGAGGTCAGGGTTTACCGTACGACCTGTGGCTGGATATCTGTCACCACGAGACTTCCTGGCCGGTCTGGCTTATCGAGTGTTTAATTGCACTCAGTATATACGTCACAGCACAGACCCTCTCTACACGCCAGAACCAGACACCTGTCATGAACTGCTGGGTCATGTACCACTCCTGGCCGATCCCAAGTTTGCTCAGTTTTCTCAGGAGATTGGCCTTGCATCTCTAGGCGCTTCAGATGAGGATGTGCAGAAGCTGGCAACATGCTATTTCTTCACAATTGAGTTTGGGCTGTGCAAACAGGATGGTCAGTTAAGGGCATATGGAGCAGGTCTACTGTCTTCTATTGGAGAGTTAAGGCATGCGCTTTCTGACAAAGCAAAGGTGAAGGTGTTTGATCCCAAAACCACATGCTACCAGGAGTGCCTCATTACAACATTTCAGGATGTTTATTTTGTCTCCGAGAGTTTTGAAGAAGCAAAGGAGAAAATGAGGGAATTTGCTAAAACAATAAAGAGGCCTTTTTCGGTCTACTACAACCCGTACACCCAGAGCATTGATTTATTGAAGGACACCAGGAGCATCGAGAACGTGGTTCAAGATCTACGCAGCGACCTGACCACTGTTTGTGATGCCCTGGGAAAAATGAACACGTACCTCGGTATCTAGAAAAACACCAGTGCTTCATTGTAGAATACAAATATAACAGTTTTACATGATTGAATTCAAATTACATTAATACTGTAACATTTGCAGTGATGTTGATTATCTAGGCTGAACATTCATTAGTCTTGCCTTGTCATAAGGATGGATCACATAAATTAAGGTGCGAAATCATATGGTGTCATCATATGGCAATCAAAACCAGTCAATCGTCGCTACAATGTATTAAGACACTAAAGGAACAAAAAAGGAAAAGAACAGATTTAGTATTTATCTAGTCTTTGCCTCTTTGTGCCTAATGTCATGCTTAAGACAGAAATAGAACAGATTTGTTTATTTCAACTTCATATTGCTGTATGCAGCGTTAATACGTACATATAATGAAAAAAAAAAATAAAAATAAAATCAAAATAACTAAGAACTATTCTGATTCTAATGCCATACTGTATTTGTAAAGAGTATGTTTGTGGTGCTTGCTTTATTTGTTGCTGACCAAGCCAACTTCACAATCA

Function

symbol description
tph2 Predicted to enable tryptophan 5-monooxygenase activity. Acts upstream of or within regulation of hematopoietic stem cell differentiation. Predicted to be active in neuron projection. Is expressed in brain and neurons. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; autistic disorder; major depressive disorder; and panic disorder. Orthologous to human TPH2 (tryptophan hydroxylase 2).
tbc1d15 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in polster. Orthologous to human TBC1D15 (TBC1 domain family member 15).

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K00502 TPH1_2; tryptophan 5-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05885911_05904644.mRNA True 4205 mRNA 0.45 29 5885911 5905150

Neighbor

gene id symbol gene type direction distance location
CI01000013_05878375_05880680 HAS3 coding upstream 4539 5878375 ~ 5881372 (+)
CI01000013_05851074_05870330 TANGO6 coding upstream 15041 5851074 ~ 5870870 (+)
CI01000013_05847899_05849819 NA coding upstream 35717 5847899 ~ 5850194 (+)
CI01000013_05808968_05845757 NA coding upstream 39393 5808968 ~ 5846518 (+)
CI01000013_05698947_05741884 ZFPM1 coding upstream 144027 5698947 ~ 5741884 (+)
CI01000013_05927503_05928295 NA coding downstream 22081 5927231 ~ 5928559 (+)
CI01000013_05939966_05944534 ZNF143B, ZNF143 coding downstream 34816 5939966 ~ 5944658 (+)
CI01000013_05947579_05951579 WEE1 coding downstream 42429 5947579 ~ 5952609 (+)
CI01000013_05953069_05974101 SWAP70B, SWAP70 coding downstream 47919 5953069 ~ 5974851 (+)
CI01000013_06025196_06025887 NA coding downstream 119553 6024703 ~ 6026840 (+)
G81630 NA non-coding upstream 93210 5792238 ~ 5792701 (+)
G81628 NA non-coding upstream 95216 5779007 ~ 5790695 (+)
G81616 NA non-coding upstream 116926 5768785 ~ 5768985 (+)
G81615 NA non-coding upstream 117405 5768299 ~ 5768506 (+)
G81608 NA non-coding upstream 124347 5761359 ~ 5761564 (+)
CI01000013_06050285_06059640 NA non-coding downstream 123459 6049864 ~ 6060269 (+)
G81679 NA non-coding downstream 125042 6030192 ~ 6032642 (+)
CI01000013_06076169_06080164 NA non-coding downstream 173412 6075400 ~ 6081684 (+)
G81672 NA non-coding downstream 178324 6083474 ~ 6084895 (+)
G80845 NA other upstream 1049679 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1820082 4050837 ~ 4065829 (+)
G80062 NA other upstream 2301127 3584008 ~ 3584784 (+)
G79309 NA other upstream 3418740 2466765 ~ 2467171 (+)
G77695 NA other upstream 4932942 946521 ~ 952969 (+)
G81994 NA other downstream 1430795 7335945 ~ 7338239 (+)
G82168 NA other downstream 2123188 8028338 ~ 8041343 (+)
G82581 NA other downstream 3424179 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013337 tph2 coding NC_007129.7 CM002902.2 16989764 ~ 17001056 (-)
bowfin (Amia calva) AMCG00006704 NA coding CM030134.1 CM030134.1 14978693 ~ 15002282 (+)