CI01000013_05953069_05974101 (SWAP70B, SWAP70)


Basic Information

Item Value
gene id CI01000013_05953069_05974101
gene name SWAP70B, SWAP70
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5953069 ~ 5974851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05953069_05974101.mRNA
ATGGGACTAAGGGACGAACTCCTCAAGGCAATATGGCATGCATTCACAGCCCTGGATGTGGATAAAAGTGGGAAAGTGTCTAAGTCGCAGTTGAAGGTGCTTTCCCATAACCTCTGCACAGTGATGAAGATCCCTCATGATCCTGTAGCTCTGGAGGAACACTTTAGAGATGATGATGAGGGTCCTGTTTCCAATCAGGGATACATGCCTTACCTGAACAGGTTCATTCTGGACAAGCTGTCAGAATCCATGCAGTCTTGCTCATCCCAAACACTTCATACCACAAAACTTAAGACTTTCTCGCCCTCACAACCCCGCACAGTCAGAGAAACCATAAAGCAGTTATTCACAGGCGTGATAAAGTCTATTTATGAATGTGATGGAGCCCAAGCTCCACTGAATACAAATGAACAGCTTCATCTGGAGAAGAACAGAGGCTCCACTGGCCACTCAGGTCTCCACAAGGCCCCTATTGTGAGGCTCCCGGAGAAAGCAGGGGCGCGATGGGAGGTCCAGGACAACTTTGACCGAATAGATTTTAATAGGATGTGCTGGACTCTGTGTGCCAGAAAAAATCTAAACAGAAACCACCTTCTTATCTCAGATGATGATGCATTTAAGATATGGTGCATTTTCAACTTCCTGTCTGAGGATAAATATCCATTGGTCATGGTCTCAGAGGAGATAGAGTACTTCCTTCGTAAGCTAACGGAAGCCATGGGTGGCAGCTGGATCGAAGAAAAATTTGAAGAGTACAAGATCCAGCTGAGCAGCAAGCACCAGTGTCTGATTGTGTGGGAGCTGATCGAGCTGGTGGGTATGGGTCACTTCAGTAAGGGCATGGACCGCCAGACCCTCTCCATGGGCATTAATGAAGTGTTCCAGGAACTTATTCTGGATGTGCTCAAACAGTCCTTACCCGATAAGGAGGGCAAAAAGTGCCTTTTCTACGTTAAGTGCTCTGACAAAAGCTTTGAAATCAGTGCCTCCGATAAGAAGAAAAAACAAGAGTGGATTCAAGCTATTCAGACTTGTATCACACTCCTGAAGGTCGGACGTCCGGCTCCACACCACGAGGCACGGCAGAAACGGCGAGAGTTACGGCAGAAACAACAGGCTGAGCAGGAAGAACTGGAGCTGAGGATGAGAGAGCTGCAGACGGCCAATGAGAACAAACAGAGAGAGCTGGAGGCCATGAGGGAGAAACTGGAGGAGGCCGCAGCCAATGCAGCAGAAGAGGAACACAGACGTCTGCAGACCCAGAACGAGCTGCAGGACCTCTACAGGGTGGAAATGGAGAAAGAGAAAATGGTGCGGCAGCAAATGGAGGAACAGGTGGCTCAAAAGTCCAGTGAGTTAGAGCAGTATCTGCAGCGCGTACGTGAGCTGGAGAGCATGTACCACCGCTTAGAAGAAGCACTAGAGGAAGAAAGACAGGCCAGACAGGATGAGGAAACGGTCAGAAAACTACAGGCCAGGCTGTTGGAGGAGGAGGTATCCAAGCGTGCAGAGCTTGAGCAGATACACCTGTATCAACAGCAGACCATTACTCAGACACAAGCAGAGAAGCAGGAGCTGGAACGCGAACGGCTGGCAAAGGAAAGCGCTCTGGATTCTGCCATGCAGCAGCTGCAGCAGCTCGAAGCGGAGAGACAAGGGGCACTGGAGCAATATGAGGAGGTGATGAAGAAACTAGCAGATGCTGCTAATAATACAAGGAGCTGGAAAGACAAGGTGACACAGCATGAGGGACTCATACGACTCATTCAGCCAGGTCCTAAGCACCCTCAGAAAATCACAAACTGGGGACCTGCAGCATTCACAGAGACAGAGCTGAGTCTGAGAGAGAAGGACTGGCAGGATAAGAAAAACAGGCCTGCTACACCGCAGTAGTGCCCTTAAAGTGTTCCTAGTTATACTGTGCTGTTAATACACCGTTACTGTAGATAAAGTCACTAGTGAAGTATGTATACTGCCTCTGTGGGGTTAGTCTCTGACCACACTAAAACTGTAGGCCATTTGACTTTACATAAGGTAAAGTTTAGCCTGGCCTCATCTGAAGAATCGTGTCTCACCATTCCAATCTATACTGTAACATTTCAGTGTCATTTTGCCCTCTGCTTTGAAGTGATTTTATACATTTTTGTATGATGTTCTATATCTTGTGAATGTGTTGATTTTGGTGCATTTCCACCAAAGTACTGGCAGATGTTTCTTCCCCGTAGTTGGTGAGTTTTAAACCTTTTTTTTTAATTTTTATAAAAGTAAAAAAAATAATGAAGTAAAAAAAACCTCACTGACCAAGTAACTTTTTACAAAGTGCACTTATGCATACATTGCAGTCATCTCTAATTTAGTATCAAAAATGTCTATTTTACATTTTAAATAGTAATACATCATGCAAAATGGATTTTGATATTGTATTCATAATACTTTTGCTAGCACAGTTAACATAGCAGTTGTTCCCATACTCATTCAAGGAGACATGATTGCAGTATTAACTAATTATTAACAAAACATTTTACCACAATTTATCTGTGTTTTTGGGATTATTCAGTCAATTACAATGCCATACCAAACTGCTGTATTTGCCTCAAACTAACGCCCAGATTTAAGTGCCAAGACTGTATTGTTTATCATTCA

Function

symbol description
swap70b Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension; positive regulation of oligodendrocyte differentiation; and regulation of exit from mitosis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; pectoral fin; and vasculature. Orthologous to human SWAP70 (switching B cell complex subunit SWAP70).
swap70 Enables cadherin binding activity. Predicted to be involved in regulation of actin polymerization or depolymerization. Predicted to act upstream of or within isotype switching. Located in actin cytoskeleton; cytoplasm; and plasma membrane.

GO:

id name namespace
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05953069_05974101.mRNA True 2643 mRNA 0.45 12 5953069 5974851

Neighbor

gene id symbol gene type direction distance location
CI01000013_05947579_05951579 WEE1 coding upstream 460 5947579 ~ 5952609 (+)
CI01000013_05939966_05944534 ZNF143B, ZNF143 coding upstream 8411 5939966 ~ 5944658 (+)
CI01000013_05927503_05928295 NA coding upstream 24510 5927231 ~ 5928559 (+)
CI01000013_05885911_05904644 TPH2, TBC1D15 coding upstream 47919 5885911 ~ 5905150 (+)
CI01000013_05878375_05880680 HAS3 coding upstream 71697 5878375 ~ 5881372 (+)
CI01000013_06025196_06025887 NA coding downstream 49852 6024703 ~ 6026840 (+)
CI01000013_06038814_06043689 NA coding downstream 63963 6038814 ~ 6045236 (+)
CI01000013_06050285_06059640 NA coding downstream 75013 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA coding downstream 100549 6075400 ~ 6081684 (+)
CI01000013_06132773_06163282 NA coding downstream 157714 6132565 ~ 6163637 (+)
G81630 NA non-coding upstream 160368 5792238 ~ 5792701 (+)
G81628 NA non-coding upstream 162374 5779007 ~ 5790695 (+)
G81616 NA non-coding upstream 184084 5768785 ~ 5768985 (+)
G81615 NA non-coding upstream 184563 5768299 ~ 5768506 (+)
G81608 NA non-coding upstream 191505 5761359 ~ 5761564 (+)
G81679 NA non-coding downstream 55341 6030192 ~ 6032642 (+)
G81672 NA non-coding downstream 108623 6083474 ~ 6084895 (+)
G80845 NA other upstream 1116837 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1887240 4050837 ~ 4065829 (+)
G80062 NA other upstream 2368285 3584008 ~ 3584784 (+)
G79309 NA other upstream 3485898 2466765 ~ 2467171 (+)
G77695 NA other upstream 5000100 946521 ~ 952969 (+)
G81994 NA other downstream 1361094 7335945 ~ 7338239 (+)
G82168 NA other downstream 2053487 8028338 ~ 8041343 (+)
G82581 NA other downstream 3354478 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2197600 LOC106584609 non-coding NC_050570.1 CM025857.1 9269283 ~ 9298421 (+)