CI01000013_05939966_05944534 (ZNF143B, ZNF143)


Basic Information

Item Value
gene id CI01000013_05939966_05944534
gene name ZNF143B, ZNF143
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5939966 ~ 5944658 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05939966_05944534.mRNA
GCAGATCATGCTCTTAGCCCAGGTGAATCGAGACACCCAGGGCATGGAGTTTCAAAGTGTGGACGGGGACCCGCAGCAGGTCACCCTTTGTCTGACGGAGGCAGTAACGGTTGGAGATGACAACATGGAGGGAATGGACACAGTGAGCTTGCAGGCGGTGACTTTAGTGGATGGCTCCACAGCATACATCCAACATAGCCCTAAAGGTGGAGAAGGATTGAGACTAGAAGATGGGCAAGCTGTGCAACTGGAGGATGGAACGACCGCTTACATTCATGCACCCAAAGAAACATATGATCAGGGCGGTTTACAGGCTGTTCAGCTGGAGGATGGCACCACTGCATATATTCAGCATATGCCTCCATCCAACACCATCTTGGCCATCCAGGCAGATGGTACTGTAGCAGACTTACAGACGGAGGGCACGATTGACGCAGAGACCATCAGTGTGCTGGAGCAATACTCTACTAAGATGGAGGCCACAGAATGTAGTACTGGGTTACTTGGTCGAGGAGACTCTGATGGCAGTGTGCATATGCAGATTGTACTGCAGGGTCAAGACAGTCGGTCACCTAGAGTCCAGCATGTTGGGGAAAAGGCTTTCCGTTGTGATCATGAGGGTTGTGGAAAACTCTACACTACTGCTCACCATCTGAAGGTGCATGAAAGATCGCACACTGGGGATAAACCATACATTTGTGAACATATGGGTTGTGGCAAAAAGTTTGCAACAGGCGAAAAACCATTTAAATGTCCATTTGAAGGATGTGGGAGATCTTTCACCACTTCAAACATTCGTAAAGTCCACATCCGTACTCACACAGGCGAGAGGCCGTACTACTGCTCCGAACCTAGCTGTGGAAGAGCCTTTGCAAGTGCCACCAATTACAAAAATCACATGAGGATCCACACAGGTGAGAAGCCTTACGTCTGCACTGTTCCTGGCTGTGACAAGCGTTTCACTGAGTACTCCAGCTTGTACAAGCACCATGTGGTTCATACGCCCTGCAAACCCTACAACTGTAACCACTGCGGAAAGACGTATAAGCAGATTTCTACATTAGCCATGCATAAACGCACAGCGCACAATGACACCGAGCCCATAGAAGAGGAACAAGAAGCTTATTTTGAGCCTCCTGCAGAGGCCATTGATGAACCTGGGTTAATGTACACACCAACAGTGGTGGAAGATGACTCTGGGTCTGAGCAGATGTCAGGATCAGAGATCATGGGACAACAGCATGTGGCTCTCATATCTCAGGATGGCACACAACAGGTTCTGTCTCAAGCAGATATGCAGGCTATGGGAGGCACGATTACCATGGTAACGCAAGAGGGAACCACCATAACCATCCCAGCACATGAAGCAATGCTTTCTTCGGGGGGAGCTCATTCTGTTACTATGGTGTCTGCAGATGGTACAGAGGGACAGGTGGCTATTGTGACGCCAGATCTGTCTGCATACCAGACAGAAGAAGGGGAGCTCGTGCAAGATCAGGAACAGCATGTGGTTTCCACAAGACCACACCCAGTCACACTGCTGGCTACCTCTAACGGCACACACATAGCTGTGCAGGTATAGAATATATACAAACGCCGACACGCGTTATGGAATTTTACTCTCACAAACAGAGTTACATTAACACACACAGCTAGGAGCGGTCACAAAGCTTAAATCATGTGTTTACTTTGCCTGAGAGTAAATA

Function

symbol description
znf143b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human ZNF143 (zinc finger protein 143).
znf143 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of snRNA transcription by RNA polymerase II. Predicted to be located in nucleoplasm.

NR:

description
Znf143 protein

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05939966_05944534.mRNA True 1706 mRNA 0.49 12 5939966 5944658

Neighbor

gene id symbol gene type direction distance location
CI01000013_05927503_05928295 NA coding upstream 11407 5927231 ~ 5928559 (+)
CI01000013_05885911_05904644 TPH2, TBC1D15 coding upstream 34816 5885911 ~ 5905150 (+)
CI01000013_05878375_05880680 HAS3 coding upstream 58594 5878375 ~ 5881372 (+)
CI01000013_05851074_05870330 TANGO6 coding upstream 69096 5851074 ~ 5870870 (+)
CI01000013_05847899_05849819 NA coding upstream 89772 5847899 ~ 5850194 (+)
CI01000013_05947579_05951579 WEE1 coding downstream 2921 5947579 ~ 5952609 (+)
CI01000013_05953069_05974101 SWAP70B, SWAP70 coding downstream 8411 5953069 ~ 5974851 (+)
CI01000013_06025196_06025887 NA coding downstream 80045 6024703 ~ 6026840 (+)
CI01000013_06038814_06043689 NA coding downstream 94156 6038814 ~ 6045236 (+)
CI01000013_06050285_06059640 NA coding downstream 105206 6049864 ~ 6060269 (+)
G81630 NA non-coding upstream 147265 5792238 ~ 5792701 (+)
G81628 NA non-coding upstream 149271 5779007 ~ 5790695 (+)
G81616 NA non-coding upstream 170981 5768785 ~ 5768985 (+)
G81615 NA non-coding upstream 171460 5768299 ~ 5768506 (+)
G81608 NA non-coding upstream 178402 5761359 ~ 5761564 (+)
G81679 NA non-coding downstream 85534 6030192 ~ 6032642 (+)
CI01000013_06076169_06080164 NA non-coding downstream 133904 6075400 ~ 6081684 (+)
G81672 NA non-coding downstream 138816 6083474 ~ 6084895 (+)
G80845 NA other upstream 1103734 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1874137 4050837 ~ 4065829 (+)
G80062 NA other upstream 2355182 3584008 ~ 3584784 (+)
G79309 NA other upstream 3472795 2466765 ~ 2467171 (+)
G77695 NA other upstream 4986997 946521 ~ 952969 (+)
G81994 NA other downstream 1391287 7335945 ~ 7338239 (+)
G82168 NA other downstream 2083680 8028338 ~ 8041343 (+)
G82581 NA other downstream 3384671 9329329 ~ 9334948 (+)

Expression


Co-expression Network