CI01000013_05808968_05845757


Basic Information

Item Value
gene id CI01000013_05808968_05845757
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5808968 ~ 5846518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05808968_05845757.mRNA
TGTGCGGGCAGGATTCGGGCCTGTTAGCCGCATCGCCATCAACGAGCTCTCCGATTAAAGATAAAGCGGCTAAGTTCTTGCTGATGGATACGCCTGAGAGCCCCACCCAGTCCCCACAATCTCCTGAGGAGGAGGAGAAGGGTCTCTCCGACAACGAGCTGCTTGAGTCGCCTGAGTCCCCAGCAGAAGCAGACAAGGGAGTGTCAGACAGTGAGCTCTTGAATGATGATGAAAATGAACTACAGGAGGGAGGAGGAGACTCAGATTTTGAGGATGGAGACAGGGTAGTAGCTGGCAGAGAAGATCCAGAGGAGATTTCAGACCTGGAAGACTACAAGATGGACAGGGAGGAGAGAGAAGACATCCACCAACAAGACCTTGAGCACGAGCGACCTTTTACCCCAGCGGAGGAAGAACGAGATGAGGAGGATGAGGCAACCACAAAGCCTGGTCTTGGCTGTGCAGAGCTTGAGGAAGATGATGATGAGGAAGAAGAGAGGAGGAGGCGGTTGAGGGCGGCGGCGGTGGTAGTGAAGGACGAATCTTCTGTGTCTAGAGATCTGGATGAGCATGAGCTGGATTATGACGAGGAGGATGATGACCTTGAAGAAGGGGAGGTCAAGGACCCCATGGACAGAAAGATCAGACCCCGACCCATCTGCAGGTTTTTCATGAAAGGTAACTGCACATGGGGCATGATCTGTAGGTTCATCCATCCAGGAGTCAATGATAAAGGCAATTATTCCCTCATTTCCAAGCCAGACCCCTTCTCTCCTAACGGAGCTCCTCCTGGAGGTGGAGGACCTCACCCCCTCATGCCTGCTAACCCCTGGGGAACCCCTGCCGTAGAAGAGTTGCCTCCCCCTCCGCCTCCTCTAGATCCTCCGGTGGAGAGCGCCTGGGAAAGAGGCCTTAGACATGCCAAAGAGGTGTTGAAAAAAGCCACCATCCGTAAAGAGCAGGAACCAGATTTCGAGGAAAAACGTTTTACCGTAACCATAGGTGAAGATGATCGAGACTTTGACAAAGAAAACGACTTCTTCAGGGAACGTGGTTATCGCATAACCAGAGAGATCAGAGATGCTGGTGATCCATATGGTGACCCATACTACGATTATGAGATGGAAGCTTTTTGGCGAGGAGGCCAGTATGAGAATTTCCGAGTGCAGTACACAGAGACCCCACTGCCGTACTACCCTGACCGAGAGCGGGATCCACGCGAGCGTCACCGGGAGAGGGAACGGGAGCACGAAAGAGACCACCGTACACTGCAATACTTAGTCTGCTTCAGAGGGCCATTGGAGCCACCAACTAAGAAGGATATAGTCCCACTGCCTAAGAGGCCAGATGAATGGAAGGACCCCTGGCGTAGGTCTAAATCCCCTAGGAGAAGACCAGGTCTCATGGGCTCCCCTCCGCGTGGCCGTAGGCGACACAGGCCCTCTGGATCTTCAGTTTCTCTTTCTAATTCATCTAGATCGCGATCCTTCTCTTCCTCACCCTCACCAACCCCCTCTGCACAAAGAAACACTAATAAAAACAAACCTGAGCAGCCTCCTGTTGCAGTGAAAGGCCACCCGTTGAAGCCTGGTGCACTGCCCCCTCCTCGCAGGGAGAAAGGACCTCCCAAAATGATGCCCAGCCCCTTGTTGCCTGAACAGCCGGGGAAACCACCTAAGCCAATCACGGAGGTGGGAAAGCCCCCCAACCCCCGTCCAGCTGGAAGACCACCTGGACCCAGAGAACCGAGAGAACCCCCCAACGTGAGAGAAGGACGTAAGAAAGAACGTCAACAGCACAACCCACCTCGCAGGCGAACAGTGAGTGGCAGTGTAAGCGGCAGCAGTTATTCTGGCTCCAGCTCAAAATCCCGTTCCTCCTCCGCCTCACTCTCCCGGTCCCGTTTCGGATCCCACAAGTCTAGCAGTAGCTCGGTCAGGAGCGCTGACTCCGATGACATGTACGCTGACCTGGCCAGCCCTGTGTCCTCTGCCAGCTCCCGATCACCCACTCCAGGCCATGCTCGCAAGGAAAGGGGCCCTCAACGGGACAGGGGCCCCAACAAAGAGAGAGGAAAACCACCAAAGAAAGACGAGCCTTTCAAAGATGAGCGAAAACGAGTGGACCCCTCCGGTCTCCCCCCTAAAACCAGCTCCAGCATGCCTAGATCTGGGAACAGAGGTCACCCCATGCACCCGCCGCCTATGGGTCCTCCAGGAGGATACGGCTCTCACAAGGACATCAAACTTACCCTACTCAACAAGCAGCAAACCGACAGGGGCAATAGGAAAAGGTACTTTCCTGCCGACAAAGAGCGACCCCCTTCGCCTCTCAGCAAGAGGATAGCGATGTCACCTGACAGAGTTCCTCAAGCATCACACTCTGATCTCTTCATAGGTCGAGACAGGAGAATGCCCGGGCGACCACCGCTATCTCCCAGAATGGATCGGCCCAAAGGCCAGGGTCCTCGGCCCATGCCACCACAAGGAGAAAGGAAGCGTCCTCTATCTCCTCCACCCAAGTCTTCTGGGAAAGGCCCTGCTGCAGTGTCTGCAGGTAAACCTCCTGCGCCCGGGGCTGGATCCGGTTCTGGCTCCGCTTCTAGTTCCGGCTCGGGCAAGCCGAGCAGCACCCTTTCTCGCCGCGAGGAGCTGCTAAAACAGCTAAAGGCTGTCGAGGACGCCATAGCCCGCAAAAGGGCAAAAATCCCTGGGAAATAATCTACCTGGCGTCATCCAGCTTCTGGGACATCCAGTTTTGCCCAGTGTTTGCCAGAAATGGGGAATACTTGCCGTTCTGAACTCCAAGGATGTCTCACATAAATGTCCTAGGGAAAAGAGACCGCAGTTACATTTCTGCTTGTTTTGCCCTCAGAGAGAGGTTGTCTAGATTTTATATCGATGTGATAAAGTTGAGAAGTGGCGCTGTTCACTTGTTTTCGCAGGATGGAATCTTTACTGTAGTGTCTCAAACATTAAAAAAAAACTGTACATTCAGTGCACATTTTTGCTCTTCATCCTGCCACAATTCCTTCTCTCATATATTCTAGTTGCTTTTTCCTCACTCCTGTTATTTTATGGGGCGAGTTACGGTGGACAGTGTTTGGACCATCCTGGACGCATCTGCGCATTCAACGTCGGTCCTGCTCAAAGAATCTAGAACTGCCTTTTCCAACTTAACCAATGAATTTGTCTATCCGCCGCCACGTGTTTAGCCATTACTGTTTTTCACCATGTACAACTACAAAGCCAGATGACACAATACCTGTTGCTTAAAGTGTATGATTCTAGAAAACCAATGACAGTGATGTGAAGTATTGCTTTTTTAAGATTCTGCATTGTTCCCCCCCTAGCTTTTCAAGTGAAAACCTGCATTTTATTTGTCCCTCATTTTTAGTTGAAAGTGCGAGAGGCTGCAATGGGGACACCTGGAAATAAGGAATAATTCCGTCTTGCTTTTTGTGACAGAAAAAAGCTTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05808968_05845757.mRNA True 3481 mRNA 0.52 19 5808968 5846518

Neighbor

gene id symbol gene type direction distance location
CI01000013_05698947_05741884 ZFPM1 coding upstream 67084 5698947 ~ 5741884 (+)
CI01000013_05636898_05637901 NA coding upstream 170884 5636747 ~ 5638084 (+)
CI01000013_05607381_05608529 FOXL1 coding upstream 200398 5606883 ~ 5608570 (+)
CI01000013_05583328_05584677 B3GNT9 coding upstream 224264 5583328 ~ 5584704 (+)
CI01000013_05572116_05579830 BBS2 coding upstream 228829 5571340 ~ 5580139 (+)
CI01000013_05847899_05849819 NA coding downstream 1381 5847899 ~ 5850194 (+)
CI01000013_05851074_05870330 TANGO6 coding downstream 4556 5851074 ~ 5870870 (+)
CI01000013_05878375_05880680 HAS3 coding downstream 31857 5878375 ~ 5881372 (+)
CI01000013_05885911_05904644 TPH2, TBC1D15 coding downstream 39393 5885911 ~ 5905150 (+)
CI01000013_05927503_05928295 NA coding downstream 80713 5927231 ~ 5928559 (+)
G81630 NA non-coding upstream 16267 5792238 ~ 5792701 (+)
G81628 NA non-coding upstream 18273 5779007 ~ 5790695 (+)
G81616 NA non-coding upstream 39983 5768785 ~ 5768985 (+)
G81615 NA non-coding upstream 40462 5768299 ~ 5768506 (+)
G81608 NA non-coding upstream 47404 5761359 ~ 5761564 (+)
CI01000013_06050285_06059640 NA non-coding downstream 182091 6049864 ~ 6060269 (+)
G81679 NA non-coding downstream 183674 6030192 ~ 6032642 (+)
CI01000013_06076169_06080164 NA non-coding downstream 232044 6075400 ~ 6081684 (+)
G81672 NA non-coding downstream 236956 6083474 ~ 6084895 (+)
G80845 NA other upstream 972736 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1743139 4050837 ~ 4065829 (+)
G80062 NA other upstream 2224184 3584008 ~ 3584784 (+)
G79309 NA other upstream 3341797 2466765 ~ 2467171 (+)
G77695 NA other upstream 4855999 946521 ~ 952969 (+)
G81994 NA other downstream 1489427 7335945 ~ 7338239 (+)
G82168 NA other downstream 2181820 8028338 ~ 8041343 (+)
G82581 NA other downstream 3482811 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013341 il17c coding NC_007129.7 CM002902.2 17075985 ~ 17147803 (-)
bowfin (Amia calva) AMCG00020634 LOC106573693 coding CM030127.1 CM030127.1 27121252 ~ 27131382 (+)